# Crotonate suppresses breast cancer metastasis and promotes immunotherapy response by inducing ACSS2-mediated EZH2-K348 crotonylation

**Authors:** Bo Liu, Xinwei Duan, Ge Wang, Youzhi Tang, Kunhao Zhou, Jing Zhang, Yu Yu, Hongquan Zhang

PMC · DOI: 10.1126/sciadv.aea9892 · 2026-01-16

## TL;DR

Crotonate, a short-chain fatty acid, can reduce breast cancer growth and improve immunotherapy by causing the breakdown of the EZH2 protein.

## Contribution

Crotonate induces EZH2-K348 crotonylation, leading to its degradation and suppression of breast cancer.

## Key findings

- Crotonate promotes EZH2 degradation via K348 crotonylation.
- Crotonate inhibits breast cancer growth and metastasis more effectively than tazemetostat.
- Crotonate combined with anti-PD-L1 improves immunotherapy response in breast cancer.

## Abstract

Crotonate, a short-chain fatty acid, generates protein crotonylation. However, the role of crotonate in cancer progression is unknown. Here, we present a crotonate–crotonyl–coenzyme A (CoA)–enhancer of zeste homolog 2 (EZH2) crotonylation cascade blocking breast cancer growth and metastasis. We demonstrated that crotonate promotes EZH2 degradation via crotonyl-CoA–mediated crotonylation at Lys348 in EZH2 (EZH2-K348cr). EZH2-K348cr leads to reduced genome-wide H3K27me3 (trimethylation of lysine-27 on histone-3) occupancy. Crotonate metabolizes to crotonyl-CoA by ACSS2 (acyl-CoA synthetase 2), and then, acyltransferase p300 catalyzes crotonyl-CoA and generates EZH2-K348cr. Crotonylated EZH2 triggers EZH2 ubiquitination and degradation. Administration of crotonate markedly inhibits breast cancer cell growth and metastasis via a crotonate-crotonyl-CoA-EZH2-K348cr cascade. In comparison, crotonate showed better blocking effect than EZH2 inhibitor tazemetostat in suppressing breast cancer metastasis. The combination of crotonate and anti-PD-L1 (programmed cell death ligand 1) antibody enhances responses of breast cancer cells to immunotherapy. Together, our findings indicate that crotonate is a promising anticancer drug candidate that suppresses breast cancer growth and metastasis by specifically inducing EZH2 degradation.

Short-chain fatty acid crotonate is a possible breast cancer killer through inducing the degradation of oncogenic protein EZH2.

## Linked entities

- **Genes:** EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146], ACSS2 (acyl-CoA synthetase short chain family member 2) [NCBI Gene 55902], EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033]
- **Proteins:** EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit), EP300 (EP300 lysine acetyltransferase)
- **Chemicals:** crotonate (PubChem CID 6971246), crotonyl-CoA (PubChem CID 644064), tazemetostat (PubChem CID 66558664)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, ACSS2 (acyl-CoA synthetase short chain family member 2) [NCBI Gene 55902] {aka ACAS2, ACECS, ACS, ACSA, AceCS1, dJ1161H23.1}
- **Diseases:** cancer (MESH:D009369), breast cancer (MESH:D001943), metastasis (MESH:D009362)
- **Chemicals:** tazemetostat (MESH:C000593333), short-chain fatty acid (MESH:D005232), CoA (-), coenzyme A (MESH:D003065), Crotonate (MESH:D003437)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12810637/full.md

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Source: https://tomesphere.com/paper/PMC12810637