# CtBP1/2 oligomerization promotes G9a-Mediated transcriptional repression

**Authors:** Bin Zhang, Junheng Jiang, Wenxin Sun, Shengwei Hu, Peihan Chen, Linsheng Li, Meizhi Jiang, Junjie Chen, Jinzhang Zeng, Dachuan Cai, Qiang Luo, Wen Liu, Qixu Cai, Siming Chen

PMC · DOI: 10.1016/j.jbc.2025.111063 · The Journal of Biological Chemistry · 2025-12-17

## TL;DR

This study reveals how CtBP1/2 proteins interact with G9a to repress gene expression, offering new insights into colorectal cancer.

## Contribution

The study identifies a structural mechanism by which CtBP1/2 tetramers activate G9a, linking it to gene repression in cancer.

## Key findings

- CtBP1/2 tetramers interact with G9a to enhance its H3K9 methylation activity.
- Disrupting CtBP2 tetramerization reduces G9a activity and PTEN repression in CRC cells.
- The CtBP1/2-G9a complex is shown to regulate CRC cell proliferation via PI3K-AKT signaling.

## Abstract

Corepressors CtBP1 and CtBP2 (CtBP1/2) are evolutionarily conserved transcriptional regulators that repress gene expression by recruiting chromatin modifiers, yet the structural basis of this process remains elusive. Here, we identify a direct interaction between CtBP1/2 and the histone H3 lysine 9 (H3K9) methyltransferase G9a. Crystallographic and biochemical analyses reveal that a CtBP1/2 tetramer simultaneously engages two G9a molecules through a motif within the pre-SET domain of G9a, which is absent in its paralog GLP. This interaction enhances G9a catalytic activity in a manner strictly dependent on the oligomeric state of CtBP1/2. Disruption of CtBP2 tetramerization diminishes its association with G9a and abolishes enzymatic activation, underscoring the functional importance of CtBP1/2 oligomerization. In colorectal cancer (CRC) cells, CtBP2 and G9a co-occupy the PTEN promoter, where disruption of their interface reduces H3K9me2 deposition, derepresses PTEN expression, attenuates PI3K-AKT signaling, and impairs CRC cell proliferation. Together, these findings establish a structural framework for CtBP-mediated regulation of G9a activity and highlight the CtBP1/2-G9a complex as a potential therapeutic target in colorectal cancer.

## Linked entities

- **Genes:** PTEN (phosphatase and tensin homolog) [NCBI Gene 5728]
- **Proteins:** CTBP1 (C-terminal binding protein 1), CTBP2 (C-terminal binding protein 2), EHMT2 (euchromatic histone lysine methyltransferase 2), RCBTB1 (RCC1 and BTB domain containing protein 1), PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), AKT1 (AKT serine/threonine kinase 1)
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CTBP1 (C-terminal binding protein 1) [NCBI Gene 1487] {aka BARS, HADDTS}, CTBP2 (C-terminal binding protein 2) [NCBI Gene 1488], EHMT1 (euchromatic histone lysine methyltransferase 1) [NCBI Gene 79813] {aka EHMT1-IT1, EUHMTASE1, Eu-HMTase1, FP13812, GLP, GLP1}, EHMT2 (euchromatic histone lysine methyltransferase 2) [NCBI Gene 10919] {aka BAT8, C6orf30, G9A, GAT8, KMT1C, NG36}
- **Diseases:** CRC (MESH:D015179)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12809078/full.md

## References

67 references — full list in the complete paper: https://tomesphere.com/paper/PMC12809078/full.md

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Source: https://tomesphere.com/paper/PMC12809078