# Community Dynamics Drive Calcium Carbonate Production in an Enriched Consortium of Soil Microbes

**Authors:** Marci Garcia, Natalie C. Sadler, Izabel Stohel, Sharon Zhao, Sankarganesh Krishnamoorthy, Yuliya Farris, Nicholas J. Reichart, Christopher E. Bagwell, Neerja Zambare, Ryan McClure

PMC · DOI: 10.1007/s00248-025-02632-y · Microbial Ecology · 2025-12-23

## TL;DR

A microbial community produces more calcium carbonate than individual species, suggesting that community dynamics are key to carbon storage in soil.

## Contribution

A new microbial consortium (CSC-A) demonstrates that community interactions significantly enhance calcium carbonate production beyond individual contributions.

## Key findings

- CSC-A produces significantly more calcium carbonate than the sum of its individual members.
- Rhodococcus species produce the most calcium carbonate, but community dynamics are essential for maximum output.
- The study highlights the importance of analyzing microbial communities rather than individual species for understanding carbonate formation.

## Abstract

Recently, there has been a focus on using soil microbes as a means to store carbon in the soil in the form of calcium carbonate, outcomes of which include soil stabilization and biocementation. The molecular processes involved in microbially induced calcium carbonate formation are known, but there is still a significant knowledge gap regarding how community interactions, emergent processes that are distinct from the roles of individual members, may drive the formation of carbonate. To answer these questions, we describe the development and application of a consortium of soil microbes consisting of one species each of the Rhodococcus, Microbacterium, and Curtobacterium genera and two species from the Bacillus genus. We term these five species cultivated together carbon storing consortium A (CSC-A). Growth assays show that only a subset of CSC-A members produces CaCO3 with Rhodococcus producing the most CaCO3 but the complete CSC-A produces significantly higher amounts of CaCO3 compared to the sum total carbonate produced by all member species. The development of CSC-A shows that CaCO3 production may be as much a community process as it is the contribution of individual species, requiring us to move beyond single species analysis to fully understand carbonate formation by microbial communities in nature. CSC-A will allow the scientific community to ask and answer key questions about the molecular interactions surrounding inorganic carbon formation in soil, an important knowledge gap that must be filled if we wish to stabilize soils and harness microbial processes for materials production.

The online version contains supplementary material available at 10.1007/s00248-025-02632-y.

## Linked entities

- **Chemicals:** calcium carbonate (PubChem CID 10112), CaCO3 (PubChem CID 10112)
- **Species:** Rhodococcus (taxon 1827), Microbacterium (taxon 33882), Curtobacterium (taxon 2034), Bacillus (taxon 1386)

## Full-text entities

- **Chemicals:** inorganic carbon (-), CaCO3 (MESH:D002119), carbon (MESH:D002244), carbonate (MESH:D002254)
- **Species:** Rhodococcus (genus) [taxon 1661425], Curtobacterium (genus) [taxon 2034], Bacillus (genus) [taxon 55087], Microbacterium (genus) [taxon 33882]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12808153/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC12808153/full.md

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Source: https://tomesphere.com/paper/PMC12808153