# Microbiome–volatile metabolome analysis reveals aroma regulation driven by microbial niche competition in Jinggang honey pomelo wine

**Authors:** Yang Wu, Weiwei Li, Jianan Shi, Zhihao Zhang, Cheng Jing, Jianqi Sheng, Zexia Li, Xiaowen Shi, Dingkun Liu, Li He, Huimin Sun

PMC · DOI: 10.3389/fmicb.2025.1725554 · Frontiers in Microbiology · 2026-01-02

## TL;DR

This study explores how microbial competition during fermentation affects the aroma of pomelo wine, identifying key microbes and volatile compounds involved.

## Contribution

The study reveals how inter-kingdom microbial competition influences aroma formation in pomelo wine through dynamic shifts in microbial communities and volatile compounds.

## Key findings

- Weissella, Pediococcus, Lactiplantibacillus, and other microbes dominate during fermentation.
- 17 key volatile compounds were identified as crucial for aroma formation.
- Lactiplantibacillus and Aspergillus are strongly linked to flavor molecule production.

## Abstract

Microbial succession in fruit wine has been reported, but the ecological mechanisms linking niche competition to aroma formation remain poorly understood. To test the hypothesis that niche competition between microbial communities significantly influences aroma formation in pomelo wine, the flesh of Jinggang honey pomelo was subjected to semi-inoculation fermentation to produce Jinggang honey pomelo wine.

High-throughput amplicon sequencing technology was used to investigate the evolving microbial community during the fermentation process of pomelo wine. The changes in volatile compounds were measured using headspace solid phase microextraction (HS-SPME) coupled with gas chromatography-mass spectrometry (GC-MS).

The dominant taxa in the wine were Weissella, Pediococcus, Lactiplantibacillus, Saccharomyces, Komagataella, Wickerhamomyces, and Aspergillus. The microbiota shifts were associated with dynamic changes in physicochemical properties, and they altered the pH, alcohol content, total soluble solids, and overall acidity. Principal component analysis (PCA), orthogonal partial least squares-discriminant analysis (OPLS-DA), and relative odor activity value analysis identified 17 key volatiles. A correlation network analysis revealed that Lactiplantibacillus and Aspergillus were strongly associated with various flavor molecules.

The present findings suggested that inter-kingdom niche competition between fungi and bacteria plays a pivotal role in shaping the aroma profile of pomelo wine, offering new insights for targeted aroma regulation.

## Linked entities

- **Species:** Weissella (taxon 46255), Pediococcus (taxon 1253), Lactiplantibacillus (taxon 2767842), Saccharomyces (taxon 4930), Komagataella (taxon 460517), Wickerhamomyces (taxon 599737), Aspergillus (taxon 5052)

## Full-text entities

- **Chemicals:** alcohol (MESH:D000438)
- **Species:** Aspergillus (genus) [taxon 5052], Komagataella (genus) [taxon 460517], Wickerhamomyces (genus) [taxon 599737], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Pediococcus (genus) [taxon 1253], Weissella (genus) [taxon 46255]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12807929/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12807929/full.md

## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12807929/full.md

---
Source: https://tomesphere.com/paper/PMC12807929