# Arid1a Deficiency Drives Aristolochic Acid‐Induced Liver Tumorigenesis through Ctnnb1 Mutation and Defective Nucleotide Excision Repair

**Authors:** Lan Wang, Shi‐Hao Bai, Shu‐Jin Song, Xiao‐Li Zhang, Xue‐Ying Shang, Zhao‐Ning Lu, Xiao‐Fang Cui, Xin‐Le Zhu, Ze‐Guang Han

PMC · DOI: 10.1002/advs.202513981 · Advanced Science · 2025-10-24

## TL;DR

Arid1a deficiency makes the liver more vulnerable to a carcinogen called aristolochic acid, leading to faster tumor growth and specific genetic changes.

## Contribution

The study reveals a dual mechanism where Arid1a deficiency impairs DNA repair and increases carcinogen activation, promoting liver cancer.

## Key findings

- Arid1a deficiency leads to impaired nucleotide excision repair and increased AAI bioactivation.
- A specific Ctnnb1 mutation causes β-catenin activation and tumor growth in Arid1a-deficient livers.
- Blocking β-catenin signaling reduces AAI-induced tumors in Arid1a-deficient mice.

## Abstract

ARID1A, which encodes an important subunit of SWI/SNF complex, is frequently mutated in non‐malignant tissues and tumors. However, how ARID1A loss enables environmental carcinogens to initiate tumorigenesis remains unknown. Here, liver‐specific Arid1a‐deficient (Arid1aLKO
) mice are exposed to aristolochic acid I (AAI), a potent herbal carcinogen. Notably, AAI dramatically accelerated hepatocarcinogenesis in Arid1a‐deficient livers, accompanied by a specific 3′ splice‐site mutation in Ctnnb1 in most tumors and adjacent non‐tumorous tissues. This mutation results in exon 3 skipping and subsequent β‐catenin activation. Single‐nucleus RNA‐seq coupled with phylogenetic analyses reveals AAI‐induced tumor microenvironment alteration and clonal expansion of β‐catenin‐activated cells. Conversely, inhibition of β‐catenin signaling significantly suppresses AAI‐induced tumors in the context of Arid1a loss. Mechanistically, Arid1a deficiency transcriptionally represses the expression of critical genes related to nucleotide excision repair, which removes AAI‐derived DNA adducts, due to SWI/SNF complex dysfunction. Simultaneously, it upregulates Nqo1, a key enzyme enhancing AAI bioactivation and AAI‐DNA adduct formation. This dual‐hit mechanism, characterized by impaired DNA repair and heightened genotoxicity, explains synergistic carcinogenesis. The study unveils ARID1A as a guardian against environmental carcinogens and proposes β‐catenin blockade for precision prevention in high‐risk patients with ARID1A‐mutant benign liver diseases.

ARID1A is frequently mutated in both non‐malignant tissues and cancers, but its role in tumor development after exposure to genotoxic carcinogen remains unclear. It is found that aristolochic acid I accelerated liver tumorigenesis in ARID1A‐deficient context by impairing nucleotide excision repair and enhancing carcinogen bioactivation, revealing key mechanisms driving cancer development.

## Linked entities

- **Genes:** ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289], ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289], CTNNB1 (catenin beta 1) [NCBI Gene 1499], NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728]
- **Proteins:** ctnnb1.S (catenin beta 1 S homeolog)
- **Chemicals:** aristolochic acid I (PubChem CID 2236), AAI (PubChem CID 9925908)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289] {aka B120, BAF250, BAF250a, BM029, C1orf4, CSS2}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}
- **Diseases:** tumor (MESH:D009369), Liver Tumorigenesis (MESH:D063646), benign liver diseases (MESH:D008107)
- **Chemicals:** AAI (MESH:C000228), Nucleotide (MESH:D009711)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12806303/full.md

## References

63 references — full list in the complete paper: https://tomesphere.com/paper/PMC12806303/full.md

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Source: https://tomesphere.com/paper/PMC12806303