# Commentary on LRAs targeting NF‐κB with epigenetic and mutational impacts on HIV latency

**Authors:** Shaoming Chen

PMC · DOI: 10.1002/imo2.31 · iMetaOmics · 2024-09-25

## TL;DR

This paper discusses how HIV latency is influenced by NF-κB and how mutations and epigenetic changes affect the success of latency-reversing agents.

## Contribution

The paper highlights new insights into how mutations and epigenetic modifications impact the effectiveness of HIV latency reversal strategies.

## Key findings

- HIV latency is regulated by NF-κB through interactions with the HIV genome's long terminal repeat.
- Epigenetic changes like DNA methylation and histone modifications can suppress NF-κB activation.
- Mutations in NF-κB binding sites can convert them to GA-binding protein sites, complicating latency reversal.

## Abstract

Human immunodeficiency virus (HIV) latency is controlled by factors like nuclear factor kappa B (NF‐κB), which binds to the long terminal repeat of the HIV genome to start viral gene expression. The primary cellular form of NF‐κB is a heterodimer comprising the DNA‐binding subunit p50 and the transactivator p65. Phosphorylation of IkappaB kinase (IκB) is driven by the IκB kinase complex, whose core is formed by the NF‐κB essential modulator. However, epigenetic changes like DNA methylation and histone modifications can suppress this activation. Recent studies show that HIV reservoirs are diverse, with complex interactions between viral and host factors affecting latency‐reversing agent (LRA) effectiveness. Mutations in the NF‐κB binding sites, converting them to GA‐binding protein sites, complicate latency reversal by altering responses to LRAs.

## Linked entities

- **Genes:** NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], CD40 (CD40 molecule) [NCBI Gene 958], RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970], Nfkbib (nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta) [NCBI Gene 18036]
- **Proteins:** NFKB1 (nuclear factor kappa B subunit 1), CD40 (CD40 molecule), RELA (RELA proto-oncogene, NF-kB subunit), Nfkbib (nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta)

## Full-text entities

- **Genes:** RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}
- **Chemicals:** LRAs (-)
- **Species:** Human immunodeficiency virus (species) [taxon 12721], Human immunodeficiency virus 1 (no rank) [taxon 11676]

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12806263/full.md

## References

20 references — full list in the complete paper: https://tomesphere.com/paper/PMC12806263/full.md

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Source: https://tomesphere.com/paper/PMC12806263