# Multiomics analyses reveal that PRMT5 regulates membrane transport and cholesterol synthesis in white adipocytes

**Authors:** Xiyue Chen, Zhihao Jia, Xiashiyao Zhang, Feng Yue, James F. Markworth, Christina R. Ferreira, Jun Wan, Shihuan Kuang

PMC · DOI: 10.1002/imo2.70055 · iMetaOmics · 2025-10-05

## TL;DR

PRMT5 regulates fat cell metabolism by controlling membrane transport and cholesterol synthesis, impacting energy balance and lipid composition.

## Contribution

This study reveals novel roles of PRMT5 in adipocyte metabolism through multiomics analyses.

## Key findings

- PRMT5 knockout alters gene expression related to glucose transport and fatty acid metabolism.
- PRMT5 regulates cholesterol biosynthesis, leading to hyperlipidemia and liver fat accumulation.
- Lipid composition changes include reduced triacylglycerols and increased glycerophospholipids.

## Abstract

The adipose tissue (AT) is a main regulator of systemic energy homeostasis, and AT ﻿dysfunction leads to insulin resistance and other metabolic complications. Protein arginine methyltransferase 5 (PRMT5) catalyzes symmetrical dimethylation of arginine residues to modulate protein stability and function. Besides its well‐studied oncogenic functions, PRMT5 has recently been shown to play a physiological role in AT through poorly understood mechanisms. Here, we explore the function of PRMT5 in AT through unbiased RNA sequencing and lipidomic analyses of AT in wild‐type and adipocyte‐specific Prmt5 knockout (Prmt5

AKO
) mice. Transcriptomic profiling revealed that Prmt5

AKO
 alters the expression of genes related to metabolism and membrane transport. Specifically, Prmt5

AKO
 induces genes enriched in glucose transport and glycolysis pathways, while suppressing genes encoding fatty acid (FA) transporters. Lipidomics analysis showed altered compositions of triacylglycerols (TAGs), fatty acids (FAs), and glycerophospholipids. Additionally, Prmt5

AKO
 promotes cholesterol biogenesis, associated with hyperlipidemia and hepatic steatosis in mice. These multiomics approaches uncover previously unappreciated roles of PRMT5 as an epigenetic regulator of metabolic homeostasis via coordinating membrane transport, balancing glucose and FA metabolism, and promoting cholesterol biosynthesis. This study highlights a novel mechanism by which protein methylation regulates systemic energy balance.

Prmt5

AKO
 downregulates genes related to fatty acid (FA) uptake, triacylglycerol (TAG) biosynthesis, and FA oxidation, while upregulating genes involved in glucose transport and glycolysis.In addition, Prmt5

AKO
 upregulates genes involved in peroxisomes and cholesterol biogenesis.These changes led to alterations in lipid composition, notably reduced TAG content and selective increases in glycerophospholipid and sphingolipid species.

Prmt5

AKO
 downregulates genes related to fatty acid (FA) uptake, triacylglycerol (TAG) biosynthesis, and FA oxidation, while upregulating genes involved in glucose transport and glycolysis.

In addition, Prmt5

AKO
 upregulates genes involved in peroxisomes and cholesterol biogenesis.

These changes led to alterations in lipid composition, notably reduced TAG content and selective increases in glycerophospholipid and sphingolipid species.

Prmt5

AKO
 downregulates genes related to fatty acid transport and triacylglycerol synthesis, while upregulating genes involved in glucose transport and cholesterol biogenesis. These changes cause alternation in lipid composition and metabolic phenotypes of Prmt5

AKO
 mice.

## Linked entities

- **Genes:** PRMT5 (protein arginine methyltransferase 5) [NCBI Gene 10419]
- **Proteins:** PRMT5 (protein arginine methyltransferase 5)
- **Diseases:** hyperlipidemia (MONDO:0021187)

## Full-text entities

- **Genes:** Akr1cl (aldo-keto reductase family 1, member C-like) [NCBI Gene 70861] {aka 4921521F21Rik}, Abcg4 (ATP binding cassette subfamily G member 4) [NCBI Gene 192663] {aka 6430517O04Rik}, Slc2a12 (solute carrier family 2 (facilitated glucose transporter), member 12) [NCBI Gene 353169] {aka GLUT-12, Glut12}, Slc5a3 (solute carrier family 5 (inositol transporters), member 3) [NCBI Gene 53881] {aka Smit1}, Slc37a4 (solute carrier family 37 (glucose-6-phosphate transporter), member 4) [NCBI Gene 14385] {aka 100043178, G6PT, G6pt1, GSD-1b, mG6PT}, Mvk (mevalonate kinase) [NCBI Gene 17855] {aka 2310010A05Rik, MK}, Atp11c (ATPase, class VI, type 11C) [NCBI Gene 320940] {aka A330005H02Rik, Ig}, Abcd2 (ATP-binding cassette, sub-family D member 2) [NCBI Gene 26874] {aka ABC39, ALDL1, ALDR, ALDRP}, Atp1a4 (ATPase, Na+/K+ transporting, alpha 4 polypeptide) [NCBI Gene 27222], Abcb1b (ATP-binding cassette, sub-family B member 1B) [NCBI Gene 18669] {aka Abcb1, Mdr1, Mdr1b, Pgy-1, Pgy1, mdr}, Scd1 (stearoyl-Coenzyme A desaturase 1) [NCBI Gene 20249] {aka Scd, Scd-1, ab}, Atp6v0e2 (ATPase, H+ transporting, lysosomal V0 subunit E2) [NCBI Gene 76252] {aka 0610006O14Rik, NM9.2}, Arfgap1 (ARF GTPase activating protein 1) [NCBI Gene 228998] {aka Arf1gap}, Apoa2 (apolipoprotein A-II) [NCBI Gene 11807] {aka Alp-2, Apo-AII, ApoA-II, ApoAII, Apoa-2, Hdl-1}, Slc7a10 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 10) [NCBI Gene 53896] {aka Asc-1, D7Bwg0847e}, Pcx (pyruvate carboxylase) [NCBI Gene 18563] {aka Pc, Pcb}, Gpam (glycerol-3-phosphate acyltransferase, mitochondrial) [NCBI Gene 14732] {aka GPAT, GPAT-1, GPAT1, P90}, Pla2g2e (phospholipase A2, group IIE) [NCBI Gene 26970], Timm13 (translocase of inner mitochondrial membrane 13) [NCBI Gene 30055] {aka D10Ertd378e, Tim9, Timm9}, LEP (leptin) [NCBI Gene 3952] {aka LEPD, OB, OBS}, Acsm5 (acyl-CoA synthetase medium-chain family member 5) [NCBI Gene 272428] {aka C730019D22, C730027J19Rik}, Cox7a1 (cytochrome c oxidase subunit 7A1) [NCBI Gene 12865] {aka COX7A, COX7AH, COX7AM}, UCP1 (uncoupling protein 1) [NCBI Gene 7350] {aka SLC25A7, UCP}, Slc40a1 (solute carrier family 40 (iron-regulated transporter), member 1) [NCBI Gene 53945] {aka Dusg, Fpn1, IREG1, MTP, MTP1, Ol5}, Tap1 (transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)) [NCBI Gene 21354] {aka ABC17, APT1, Abcb2, Ham-1, Ham1, MTP1}, Pla2g4a (phospholipase A2, group IVA (cytosolic, calcium-dependent)) [NCBI Gene 18783] {aka Pla2g4, cPLA2, cPLA2-alpha, cPLA2alpha}, Abca5 (ATP-binding cassette, sub-family A member 5) [NCBI Gene 217265] {aka ABC13, B930033A02Rik, mKIAA1888}, Supt5 (suppressor of Ty 5, DSIF elongation factor subunit) [NCBI Gene 20924] {aka Spt5, Supt5h}, Gldc (glycine decarboxylase) [NCBI Gene 104174] {aka D030049L12Rik, D19Wsu57e, b2b2679Clo}, Slc2a4 (solute carrier family 2 (facilitated glucose transporter), member 4) [NCBI Gene 20528] {aka GT2, Glut-4, Glut4, twgy}, Nup210 (nucleoporin 210) [NCBI Gene 54563] {aka 9830001L10, Pom210, gp190, gp210}, Prmt5 (protein arginine N-methyltransferase 5) [NCBI Gene 27374] {aka Jbp1, Skb1}, Slc38a3 (solute carrier family 38, member 3) [NCBI Gene 76257] {aka 0610012J02Rik, D9Ucla2, Nat1, Slc38-3, Sn1, Snat3}, Mfsd12 (major facilitator superfamily domain containing 12) [NCBI Gene 73822] {aka C19orf28, F630110N24Rik, Wdt1, gr}, Rtn2 (reticulon 2 (Z-band associated protein)) [NCBI Gene 20167] {aka MMS10-P, Ms10p, NSPLI, Nspl1}, Slc15a5 (solute carrier family 15, member 5) [NCBI Gene 277898] {aka 9830102E05Rik}, Slc39a8 (solute carrier family 39 (metal ion transporter), member 8) [NCBI Gene 67547] {aka 4933419D20Rik, BIGM103, ZIP-8, Zip8}, Smpd1 (sphingomyelin phosphodiesterase 1, acid lysosomal) [NCBI Gene 20597] {aka A-SMase, ASM, Zn-SMase, aSMase}, Srebf1 (sterol regulatory element binding transcription factor 1) [NCBI Gene 20787] {aka ADD1, SREBP1, bHLHd1}, Atp6v1c2 (ATPase, H+ transporting, lysosomal V1 subunit C2) [NCBI Gene 68775] {aka 1110038G14Rik}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Dgat2 (diacylglycerol O-acyltransferase 2) [NCBI Gene 67800] {aka 0610010B06Rik, ARAT, DGAT-2}, Cox8b (cytochrome c oxidase subunit 8B) [NCBI Gene 12869] {aka Cox8h, CoxVIII-H}, Creb1 (cAMP responsive element binding protein 1) [NCBI Gene 12912] {aka 2310001E10Rik, 3526402H21Rik, Creb, Creb-1}, Acsm3 (acyl-CoA synthetase medium-chain family member 3) [NCBI Gene 20216] {aka Sa, Sah}, Apoc3 (apolipoprotein C-III) [NCBI Gene 11814] {aka apo-CIII, apoC-III}, Slc37a2 (solute carrier family 37 (glycerol-3-phosphate transporter), member 2) [NCBI Gene 56857] {aka G3PP, Slc37a1, cI-2, ci2}, Ptgds (prostaglandin D2 synthase (brain)) [NCBI Gene 19215] {aka 21kDa, L-PGDS, PGD2, PGDS, PGDS2, Ptgs3}, Slc15a3 (solute carrier family 15, member 3) [NCBI Gene 65221] {aka Ci1, cI-1}, Prps1 (phosphoribosyl pyrophosphate synthetase 1) [NCBI Gene 19139] {aka 2310010D17Rik, PRS-I, Prps-1}, Atp7b (ATPase, copper transporting, beta polypeptide) [NCBI Gene 11979] {aka Atp7a, WND, tx}, Slc25a19 (solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19) [NCBI Gene 67283] {aka 2900089E13Rik, DNC, MUP1, TPC}, Atp6v0d2 (ATPase, H+ transporting, lysosomal V0 subunit D2) [NCBI Gene 242341] {aka 1620401A02Rik, V-ATPase}, Akr1c18 (aldo-keto reductase family 1, member C18) [NCBI Gene 105349], Gulp1 (GULP, engulfment adaptor PTB domain containing 1) [NCBI Gene 70676] {aka 3110030A04Rik, 5730529O06Rik, CED-6, Ced6, GULP, Gulp-2}, Lcat (lecithin cholesterol acyltransferase) [NCBI Gene 16816] {aka D8Wsu61e}, Adipoq (adiponectin, C1Q and collagen domain containing) [NCBI Gene 11450] {aka 30kDa, APN, Acdc, Acrp30, Ad, Adid}, Slc2a3 (solute carrier family 2 (facilitated glucose transporter), member 3) [NCBI Gene 20527] {aka Glut-3, Glut3}, Abcc3 (ATP-binding cassette, sub-family C member 3) [NCBI Gene 76408] {aka 1700019L09Rik, ABC31, MLP2, MOAT-D, MRP3}
- **Diseases:** mitochondrial abnormalities (MESH:D028361), hyperlipidemia (MESH:D006949), obesity (MESH:D009765), cancer (MESH:D009369), T2D (MESH:D003924), overnutrition (MESH:D044343), lipodystrophy (MESH:D008060), BSCL2-deficient (MESH:D052497), insulin resistance (MESH:D007333), glucose intolerance (MESH:D018149), cardiovascular disease (MESH:D002318), AT (MESH:D018205), WAs (MESH:D000090122), Prmt5 deficiency (MESH:C536512), metabolic diseases (MESH:D008659), dyslipidemia (MESH:D050171), age- and sex-dependent lipodystrophy (MESH:D058533), fatty liver (MESH:D005234)
- **Chemicals:** Lipid (MESH:D008055), TCA (MESH:D014238), hydrocarbon (MESH:D006838), monomethyl arginine (MESH:D019323), Trizol (MESH:C411644), FA (MESH:D005227), glutaraldehyde (MESH:D005976), glucose (MESH:D005947), methanol (MESH:D000432), PE (MESH:C483858), CE (MESH:D002788), Agarose (MESH:D012685), amino acid (MESH:D000596), PI (MESH:D010716), zirconium oxide (MESH:C028541), Free cholesterol (-), l-glutamine (MESH:D005973), SM (MESH:D013109), PG (MESH:D010715), sodium (MESH:D012964), sphingolipid (MESH:D013107), acetonitrile (MESH:C032159), Cer (MESH:D002518), FFAs (MESH:D005230), iron (MESH:D007501), Flux (MESH:C040639), cacodylate (MESH:D002101), 2-DG (MESH:D003847), BA (MESH:D001464), osmium tetroxide (MESH:D009993), chloroform (MESH:D002725), asymmetric dimethylarginine (MESH:C018524), sterol (MESH:D013261), ethanol (MESH:D000431), glycerol (MESH:D005990), polyA (MESH:D011061), carbohydrate (MESH:D002241), O2 (MESH:D010100), Resin (MESH:D012116), PC (MESH:D010713), PS (MESH:D010718), Oligomycin (MESH:D009840), uranyl acetate (MESH:C005460), steroid hormones (MESH:D013256), ATP (MESH:D000255), acetic acid (MESH:D019342), PBS (MESH:D007854), phospholipid (MESH:D010743), symmetric dimethylarginine (MESH:C024917), CO2 (MESH:D002245), cholesterol (MESH:D002784), Glycerophospholipids (MESH:D020404), SRB (MESH:C022027), acyl-CoA (MESH:D000214), TAG (MESH:D014280), vitamin D (MESH:D014807), ammonium acetate (MESH:C018824), water (MESH:D014867)
- **Species:** Paracoccus sp. L (species) [taxon 166788], Mus musculus (house mouse, species) [taxon 10090], Moloney murine leukemia virus (no rank) [taxon 11801], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G1377A
- **Cell lines:** XFe24 — Mus musculus (Mouse), Hybridoma (CVCL_C5HY), 3T3-L1 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0123), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12806136/full.md

## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12806136/full.md

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Source: https://tomesphere.com/paper/PMC12806136