Cooperative ligand binding in a bacterial heme-based oxygen sensor

TL;DR

This study reveals that a bacterial heme protein can bind oxygen cooperatively, which may help bacteria better sense and respond to changes in oxygen levels.

Contribution

The discovery of cooperative oxygen binding in a bacterial sensor globin, a phenomenon previously unobserved in such proteins.

Findings

Cooperative ligand binding was identified in the globin-coupled sensor protein from Pectobacterium carotovorum.

Allosteric regulation of oxygen binding is mediated by conformational changes in the distal heme pocket and helix dynamics at the dimer interface.

Heme pocket residues play a key role in transducing oxygen binding events within the dimeric sensor protein.

Abstract

Bacteria modulate essential phenotypes in response to external signals such as the availability of molecular oxygen (O2). A class of direct O2-sensing heme proteins, globin-coupled sensors, have been implicated in O2-dependent regulation of pathogenic phenotypes, including biofilm formation, motility, and virulence. While cooperative O2 binding is well known in both mammalian and prokaryotic hemoglobins, cooperative ligand binding previously has not been observed in bacterial sensor globins. This study explores the O2-dependent allosteric communication between globin domains in the globin-coupled sensor protein from Pectobacterium carotovorum (PccGCS) through equilibrium O2-binding measurements, X-ray crystallography, resonance Raman spectroscopy, and hydrogen-deuterium exchange mass spectrometry. Based on these experiments, we propose a model of allosteric regulation of O2 binding that is directed by subtle changes in distal heme pocket protein conformation and transduced through dynamics of helices at the dimer interface of the PccGCS sensor globin. Together, this work identifies cooperative ligand binding in a family of bacterial heme proteins, which could allow the bacteria to more robustly respond to small changes in O2 levels. Furthermore, this work highlights the importance of heme pocket residues in transducing the O2 binding event within the dimer and suggests a pathway for signal transduction in dimeric myoglobin-like sensor proteins.

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