# Reconstruction of Single-Cell Spatial Transcriptomes in Archival Kidney Biopsies

**Authors:** Simen F. Pettersen, Eleni Skandalou, Jessica Furriol, Tarig Osman, Hans Peter Marti, Øystein Eikrem

PMC · DOI: 10.1016/j.ekir.2025.11.036 · 2025-12-05

## Full-text entities

- **Genes:** EHD3 (EH domain containing 3) [NCBI Gene 30845] {aka PAST3}, ANPEP (alanyl aminopeptidase, membrane) [NCBI Gene 290] {aka AP-M, AP-N, APN, CD13, GP150, LAP1}, PECAM1 (platelet and endothelial cell adhesion molecule 1) [NCBI Gene 5175] {aka CD31, CD31/EndoCAM, GPIIA', PECA1, PECAM-1, endoCAM}, NPHS2 (NPHS2 stomatin family member, podocin) [NCBI Gene 7827] {aka PDCN, SRN1}, PODXL (podocalyxin like) [NCBI Gene 5420] {aka Gp200, PC, PCLP, PCLP-1, PDX, PODXL1}, DPEP1 (dipeptidase 1) [NCBI Gene 1800] {aka MBD1, MDP, RDP}, PLVAP (plasmalemma vesicle associated protein) [NCBI Gene 83483] {aka DIAR10, FELS, PV-1, PV1, gp68}, CLIC4 (CLIC family member 4) [NCBI Gene 25932] {aka CLIC4L, H1, MTCLIC, huH1, p64H1}, PDGFRB (platelet derived growth factor receptor beta) [NCBI Gene 5159] {aka CD140B, IBGC4, IMF1, JTK12, KOGS, OPDKD}, GPX3 (glutathione peroxidase 3) [NCBI Gene 2878] {aka GPx-P, GSHPx-3, GSHPx-P}
- **Diseases:** focal segmental glomerulosclerosis (MESH:D005923), nephrotic syndrome (MESH:D009404), chronic kidney disease (MESH:D051436), idiopathic nephrotic sydrome (MESH:C535761), CCA (MESH:C536211), steroid (MESH:D016114)
- **Chemicals:** paraffin (MESH:D010232), steroid (MESH:D013256), formalin (MESH:D005557), eosin (MESH:D004801), hematoxylin (MESH:D006416), StarDist (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12805023/full.md

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Source: https://tomesphere.com/paper/PMC12805023