# Pulmonary Microvascular Endothelial Antigen Presentation Activates resident CD8+ T Cells to Restrain Influenza Lung Injury

**Authors:** Yuanyun Ao, Kamal Bagale, Sophia Hu, Ahmed Mostafa, Chengjin Ye, Kienan Salvadore, Gregory Gibson, Ricardo Pineda, Jiayue Lu, Rachel Covitz, Dejuanna Chan, Ryan Langlois, James C Zimring, Paul Duprex, Claudette M St Croix, John F. Alcorn, Jalees Rehman, Melanie Koenigshoff, Luis Martinez-Sobrido, Jianhua Xing, Lianghui Zhang

PMC · DOI: 10.21203/rs.3.rs-7796497/v1 · Research Square · 2026-01-08

## TL;DR

Pulmonary microvascular endothelial cells present influenza antigens to CD8+ T cells, helping to clear the virus and reduce lung injury.

## Contribution

This study reveals that pulmonary microvascular endothelial cells function as antigen-presenting cells during influenza infection.

## Key findings

- Influenza A virus H1N1 infects PMVECs, leading to MHC-I upregulation and antigen presentation.
- PMVECs activate CD8+ T cells via MHC-I and CD40, promoting viral clearance and inflammation resolution.
- H5N1 infects PMVECs earlier and more broadly but triggers weaker CD8+ T cell responses, contributing to higher pathogenicity.

## Abstract

The remaining unacceptably high mortality of influenza-induced acute respiratory distress syndrome underscores the urgent need to identify key cellular drivers of host responses. Endothelial cells (ECs) are increasingly recognized for their immunomodulatory roles, but whether they function as antigen-presenting cells (APCs) following respiratory viral infection remains unknown. Here, we show that influenza A virus H1N1 restrictively infects pulmonary microvascular ECs (PMVECs) during late-stage acute lung injury, triggering robust MHC class I (MHC-I) upregulation in vitro, in vivo, and in ex vivo human precision-cut lung slices. Infected PMVECs present H1N1 antigens via MHC-I and co-stimulatory CD40 to lung-resident CD8+ T cells, driving their proliferation and effector function (Granzyme B, IFNγ) to promote viral clearance and resolve inflammation. This process is IFNγ-dependent and STAT1-regulated, forming a positive feedback loop that enhances PMVEC antigen presentation and CD8+ T cells activation. By contrast, the emerging H5N1 (A/Texas/37/2024) infect pulmonary ECs earlier and more broadly but elicits weaker pulmonary EC-driven CD8+ T cell responses, potentially contributing to its higher pathogenicity. These findings reveal PMVECs as active APCs in antiviral defense and highlight new avenues for immunotherapeutic intervention.

## Linked entities

- **Proteins:** MHC-I (BOLA class I histocompatibility antigen, alpha chain BL3-7), CD40 (CD40 molecule), IFNG (interferon gamma), STAT1 (signal transducer and activator of transcription 1)
- **Diseases:** influenza (MONDO:0005812), acute respiratory distress syndrome (MONDO:0006502)

## Full-text entities

- **Genes:** Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, Ifngr1 (interferon gamma receptor 1) [NCBI Gene 15979] {aka CD119, IFN-gammaR, Ifgr, Ifngr, Nktar}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, H2-D4 (histocompatibility 2, D region locus 4) [NCBI Gene 14967] {aka H-2D4}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, Ighg2b (immunoglobulin heavy constant gamma 2B) [NCBI Gene 16016] {aka IgG2b, Igh-3, gamma2b}, Cdh5 (cadherin 5) [NCBI Gene 12562] {aka 7B4, Cd144, VE-Cad, VECD, VEcad, Vec}, Tnfsf4 (tumor necrosis factor (ligand) superfamily, member 4) [NCBI Gene 22164] {aka Ath-1, Ath1, CD134L, OX-40L, Ox40l, TXGP1}, Tap1 (transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)) [NCBI Gene 21354] {aka ABC17, APT1, Abcb2, Ham-1, Ham1, MTP1}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Clec9a (C-type lectin domain family 9, member a) [NCBI Gene 232414] {aka 9830005G06Rik, DNGR-1}, Jak1 (Janus kinase 1) [NCBI Gene 16451] {aka BAP004, C130039L05Rik}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, Cd3g (CD3 antigen, gamma polypeptide) [NCBI Gene 12502] {aka Ctg-3, Ctg3, T3g}, Cd80 (CD80 antigen) [NCBI Gene 12519] {aka B71, Cd28l, Ly-53, Ly53, MIC17, TSA1}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Cd209a (CD209a antigen) [NCBI Gene 170786] {aka CD209, CDSIGN, CIRE, DC-SIGN, DC-SIGN1, Dcsign}, Icam1 (intercellular adhesion molecule 1) [NCBI Gene 15894] {aka CD54, Icam-1, Ly-47, MALA-2}, H2 (histocompatibility-2, MHC) [NCBI Gene 111364] {aka H-2, MHC-II}, H2-T23 (histocompatibility 2, T region locus 23) [NCBI Gene 15040] {aka 37b, 37c, H-2T23, H2-K1, H2-Qa1, Qa-1}, Cd40 (CD40 antigen) [NCBI Gene 21939] {aka Bp50, GP39, HIGM1, IGM, IMD3, T-BAM}, Irf1 (interferon regulatory factor 1) [NCBI Gene 16362] {aka Irf-1}, Cd68 (CD68 antigen) [NCBI Gene 12514] {aka Lamp4, Scard1, gp110}, Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, Xcr1 (chemokine (C motif) receptor 1) [NCBI Gene 23832] {aka Ccxcr1, Gpr5, mXcr1}, Ccr2 (C-C motif chemokine receptor 2) [NCBI Gene 12772] {aka Cc-ckr-2, Ccr2a, Ccr2b, Ckr2, Ckr2a, Ckr2b}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Vcam1 (vascular cell adhesion molecule 1) [NCBI Gene 22329] {aka CD106, Vcam-1}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Cdk1 (cyclin dependent kinase 1) [NCBI Gene 12534] {aka Cdc2, Cdc2a, p34<CDC2>}, Ly75 (lymphocyte antigen 75) [NCBI Gene 17076] {aka CD205, DEC-205, DEC205}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, Itgae (integrin alpha E, epithelial-associated) [NCBI Gene 16407] {aka A530055J10, CD103, aM290, alpha-E1, alpha-M290}, Pecam1 (platelet/endothelial cell adhesion molecule 1) [NCBI Gene 18613] {aka Cd31, PECAM-1, Pecam}, H2-D1 (histocompatibility 2, D region locus 1) [NCBI Gene 14964] {aka H-2D, H2-D, H2-K1}, H2-K1 (histocompatibility 2, K1, K region) [NCBI Gene 14972] {aka H-2K, H-2K(d), H2-D1, H2-K, K-f}, B2m (beta-2 microglobulin) [NCBI Gene 12010] {aka Ly-m11, beta2-m, beta2m}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}
- **Diseases:** H1N1 infection (MESH:D007239), EC (MESH:D005955), Influenza Lung Injury (MESH:D055370), cancer (MESH:D009369), UMAP (MESH:C567162), liver fibrosis (MESH:D008103), diabetes (MESH:D003920), PCLS infection (MESH:D012141), viral infection (MESH:D014777), IAV Infection (MESH:D007251), weight loss (MESH:D015431), death (MESH:D003643), malaria (MESH:D008288), ARDS (MESH:D012128), bird flu (MESH:D001715), lung inflammation (MESH:D011014), acute lung injury (MESH:D055371), endothelial inflammation (MESH:D007249), PCLS (MESH:D008171)
- **Chemicals:** formalin (MESH:D005557), TPCK (MESH:D014108), DAPI (MESH:C007293), agarose (MESH:D012685), L-glutamine (MESH:D005973), CC-3121 (-), penicillin (MESH:D010406), Triton X-100 (MESH:D017830), Tamoxifen (MESH:D013629), streptomycin (MESH:D013307), oligo-dT (MESH:C027903), H&amp;E (MESH:D006371), ice (MESH:D007053), CO2 (MESH:D002245), agar (MESH:D000362), isoflurane (MESH:D007530)
- **Species:** Influenza A virus (no rank) [taxon 11320], Orthomyxoviridae (family) [taxon 11308], Mus musculus (house mouse, species) [taxon 10090], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Influenza A virus (H1N1) (no rank) [taxon 1323429], unidentified influenza virus (species) [taxon 11309], Homo sapiens (human, species) [taxon 9606], H1N1 subtype (serotype) [taxon 114727], H5N1 subtype (serotype) [taxon 102793]
- **Cell lines:** B2MEC — Homo sapiens (Human), Chronic lymphocytic leukemia, Cancer cell line (CVCL_1871), MDCK — Canis lupus familiaris (Dog), Spontaneously immortalized cell line (CVCL_0422), Rosa26 — Mus musculus (Mouse), Embryonic stem cell (CVCL_A2WP), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12803330/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12803330/full.md

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Source: https://tomesphere.com/paper/PMC12803330