# Cryo-EM of autoantibody-bound NMDA receptors reveals antigenic hotspots in an active immunization model of anti-NMDAR encephalitis

**Authors:** Junhoe Kim, Farzad Jalali-Yazdi, Brian E. Jones, Gary L. Westbrook, Eric Gouaux

PMC · DOI: 10.1126/sciadv.aeb4249 · Science Advances · 2026-01-14

## TL;DR

This study uses cryo-EM to identify specific antibody binding sites on NMDARs in a mouse model of anti-NMDAR encephalitis, revealing potential therapeutic targets.

## Contribution

The study identifies antigenic hotspots on NMDARs using cryo-EM and an active immunization model, offering new insights into anti-NMDAR encephalitis.

## Key findings

- Autoantibodies bind to two distinct sites on the GluN1 amino-terminal domain.
- Structural analysis reveals antigenic hotspots that could be targeted for treatment.
- Monoclonal antibodies confirm binding sites on native NMDARs from mouse brain.

## Abstract

Autoantibodies targeting synaptic membrane proteins are associated with autoimmune encephalitis manifested by seizures, psychosis, and memory dysfunction. Anti-N-methyl-d-aspartate receptor (NMDAR) encephalitis, a prototype of these autoimmune synaptic disorders, is unexpectedly common. Unfortunately, how the native repertoire of anti-NMDAR autoantibodies recognizes NMDARs and the precise locations of antigenic epitopes remain poorly understood. Here, we used an active immunization model that closely mimics the human disease to immunize adult mice with intact GluN1/GluN2A receptors, resulting in fulminant autoimmune encephalitis. Serum was collected at 6 weeks postimmunization for single-particle cryo–electron microscopy of GluN1/GluN2A receptors complexed with purified polyclonal anti-NMDAR autoantibody fragments. Native autoantibodies recognized two distinct binding sites on the GluN1 amino-terminal domain, which we confirmed using monoclonal antibodies bound to native NMDARs purified from mouse brain. Structural analysis of autoantibody-bound NMDAR complexes identified antigenic hotspots within the GluN1 amino-terminal domain. These hotspots provide potential targets for therapeutic intervention.

Anti-NMDAR autoimmune antibodies target small antigenic sites on GluN1 ATD.

## Linked entities

- **Genes:** GRIN1 (glutamate ionotropic receptor NMDA type subunit 1) [NCBI Gene 2902], GRIN2A (glutamate ionotropic receptor NMDA type subunit 2A) [NCBI Gene 2903]
- **Proteins:** Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)), GRIN1 (glutamate ionotropic receptor NMDA type subunit 1), GRIN2A (glutamate ionotropic receptor NMDA type subunit 2A)
- **Diseases:** autoimmune encephalitis (MONDO:0020640)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)) [NCBI Gene 14810] {aka GluN1, GluRdelta1, GluRzeta1, M100174, NMD-R1, NMDAR1}
- **Diseases:** memory dysfunction (MESH:D008569), psychosis (MESH:D011618), Anti-N-methyl-d-aspartate receptor (NMDAR) encephalitis (MESH:D060426), autoimmune synaptic disorders (MESH:D001327), autoimmune encephalitis (MESH:D020274), seizures (MESH:D012640)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12802853/full.md

## References

65 references — full list in the complete paper: https://tomesphere.com/paper/PMC12802853/full.md

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Source: https://tomesphere.com/paper/PMC12802853