# An ancient genome duplication event drives the development and evolution of spinnerets in spiders

**Authors:** Fengyuan Li, Han Yang, Yiming Zhang, Shuhui Wang, Qi Gu, Meiming Wu, Pengyu Jin, Xin Huang, Yu Zhong, Xianting Huang, Yejie Lin, Xinyue Guo, Yunyun Li, Wei Zhang, Shuqiang Li

PMC · DOI: 10.1126/sciadv.adw2173 · Science Advances · 2026-01-14

## TL;DR

An ancient genome duplication helped spiders evolve spinnerets, enabling their diversification into over 53,000 species.

## Contribution

The study identifies a whole-genome duplication event linked to the origin of spinnerets in spiders.

## Key findings

- A whole-genome duplication occurred during early Arachnopulmonata evolution.
- The abdominal-A gene pair and dachshund-1 gene regulate spinneret development.
- Ancient genome duplications contributed to arthropod innovation and diversification.

## Abstract

Key appendage innovations have driven the origin and expansion of arthropods, such as spinnerets enabling spiders to occupy three-dimensional space and diversify into more than 53,000 species. Here, we investigate the genetic basis of spinneret emergence in spiders by examining the complex history and functional importance of arachnid genome evolution. Using chromosome-scale genomes from newly sequenced spiders and the whip scorpion, we integrate evidence from macrosynteny and phylogenetic analyses to provide further strong support for a whole-genome duplication (WGD) event that occurred during early Arachnopulmonata evolution. Following this event, the abdominal-A gene pair not only exhibits functional divergence but also jointly facilitates the emergence of spinnerets. Furthermore, we integrated single-cell transcriptomic analyses and functional validation to confirm that the dachshund-1 gene also regulates spinneret development. The network of duplicated gene pairs may form a cornerstone in the origin and evolution of key morphological traits, revealing that the long-term effects of ancient WGDs on innovation and diversification also occurred in arthropods.

A genome duplication event during the Silurian played a crucial role in the evolutionary emergence of spinnerets in spiders.

## Full-text entities

- **Genes:** Notch [NCBI Gene 107450518], Abd-A [NCBI Gene 107450666], dac [NCBI Gene 107453438], dac-2 [NCBI Gene 107452541], hth-1 [NCBI Gene 107439560], Dll [NCBI Gene 107450100], Hox3 [NCBI Gene 107440707]
- **Diseases:** tracheal defect (MESH:D014133), WGD (MESH:C531766), O5 spinneret-loss (MESH:D016388), I (MESH:D006969)
- **Chemicals:** Mbo I (-), CO2 (MESH:D002245), formaldehyde (MESH:D005557), 4',6-diamidino-2-phenylindole (MESH:C007293)
- **Species:** Uropygi (vinegaroons, order) [taxon 58151], Parhyale hawaiensis (species) [taxon 317513], Centruroides sculpturatus (bark scorpion, species) [taxon 218467], Atypus affinis (purseweb spider, species) [taxon 1046760], Ixodida (ticks, order) [taxon 6935], Drosophila melanogaster (fruit fly, species) [taxon 7227], Atypus sp. (species) [taxon 2892981], Bombyx mori (domestic silkworm, species) [taxon 7091], Strigamia maritima (species) [taxon 126957], Limulus polyphemus (Atlantic horseshoe crab, species) [taxon 6850], Araneae (spiders, order) [taxon 6893], Ixodes scapularis (blacklegged tick, species) [taxon 6945], Stegodyphus dumicola (species) [taxon 202533], Parasteatoda tepidariorum (common house spider, species) [taxon 114398], Scorpiones (scorpions, order) [taxon 6855]
- **Mutations:** P242T, D to F, F to G, P81A
- **Cell lines:** O4-O5 — Mus musculus (Mouse), Hybridoma (CVCL_C4LC), SAZ — Homo sapiens (Human), Prostate carcinoma, Telomerase immortalized cell line (CVCL_UZ14)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12802834/full.md

## References

86 references — full list in the complete paper: https://tomesphere.com/paper/PMC12802834/full.md

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Source: https://tomesphere.com/paper/PMC12802834