# PPE64 is a mycomembrane channel protein that functions in heme iron uptake and moonlights in biofilm formation in Mycobacterium tuberculosis

**Authors:** Padam Singh, Charles B. Kaufman, Lisa Whitworth, Reed M. Stubbendieck, Randy Morgenstein, Karen L. Wozniak, Avishek Mitra

PMC · DOI: 10.1128/mbio.03281-25 · mBio · 2025-12-11

## TL;DR

This study shows that the PPE64 protein in tuberculosis bacteria helps the bacteria take in iron from the host and also helps them form biofilms, which are important for their survival.

## Contribution

The study reveals PPE64's dual role in heme iron uptake and biofilm formation, with distinct oligomeric states for each function.

## Key findings

- PPE64 is essential for heme iron acquisition in Mycobacterium tuberculosis.
- PPE64 contributes to biofilm formation independently of iron availability.
- PPE64's absence impairs Mtb growth in human macrophages.

## Abstract

Mycobacterium tuberculosis (Mtb) is the leading cause of human deaths by an infectious agent. To survive in the human host, Mtb must acquire essential iron nutrients from the host and evade the immune response. In diderm bacteria like Mtb, outer membrane channel transporter proteins are fundamental for nutrient acquisition and immune evasion. Recently, we demonstrated that the Mtb outer mycomembrane PPE64 is a channel protein, providing the first direct evidence of channel-forming capability by a protein of the PPE (proline-proline-glutamate motif) family, which are found exclusively in mycobacteria. Here, we demonstrate that the PPE64 channel protein is specifically required for the uptake of heme, which is the largest source of iron in the human host. Furthermore, PPE64 plays a crucial role in biofilm formation, and this function is not dependent on the iron source in the medium. The moonlighting function of PPE64 is reflected in its two distinct oligomeric states, where the higher-order oligomer specifically forms water-filled channels in membranes and binds heme. The discrete roles of PPE64 are also important in an ex vivo setting, as its absence significantly impairs Mtb growth within human monocytes and alveolar macrophages. Thus, our study reveals that the PPE64 channel protein plays multiple roles in Mtb physiology and establishes it as an important factor in Mtb virulence.

The success of any invading bacteria to survive within the host is dictated by their ability to acquire nutrients and overcome the host immune response. Bacterial cell surface proteins play critical roles in these processes at the host-pathogen interface. Here, we show that the PPE64 mycomembrane channel protein is required for heme iron acquisition and biofilm formation, which are fundamental processes that are of great significance to Mycobacterium tuberculosis (Mtb) survival within the host. These discrete functions of PPE64 are dictated by the culturing environment and are important for Mtb growth within human macrophages. These observations support an emerging theme in the Mtb field that the PPE protein family functions in trafficking molecules across the outer mycomembrane and has far-reaching implications for understanding of Mtb physiology.

## Linked entities

- **Genes:** PPE64 (PPE family protein PPE64) [NCBI Gene 887822]
- **Proteins:** PPE64 (PPE family protein PPE64)
- **Chemicals:** heme (PubChem CID 4973)
- **Diseases:** tuberculosis (MONDO:0018076)
- **Species:** Mycobacterium tuberculosis (taxon 1773), Homo sapiens (taxon 9606)

## Full-text entities

- **Diseases:** deaths (MESH:D003643)
- **Chemicals:** iron (MESH:D007501), heme (MESH:D006418), water (MESH:D014867)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mycobacterium tuberculosis (species) [taxon 1773], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12802285/full.md

## References

90 references — full list in the complete paper: https://tomesphere.com/paper/PMC12802285/full.md

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Source: https://tomesphere.com/paper/PMC12802285