# Whole Genome and Single‐Cell RNA Sequencing Reveals Clonal Evolution and Heterogeneity of Secondary Plasma Cell Leukemia: A Case Report

**Authors:** Tomotaka Suzuki, Rui Yokomori, Takaomi Sanda, Masaki Ri, Shinsuke Iida

PMC · DOI: 10.1002/jha2.70215 · EJHaem · 2026-01-13

## TL;DR

This case report uses whole genome and single-cell RNA sequencing to study the clonal evolution and heterogeneity in a rare aggressive form of multiple myeloma called secondary plasma cell leukemia.

## Contribution

The study provides new insights into genomic instability and clonal evolution in secondary plasma cell leukemia through combined sequencing approaches.

## Key findings

- A major clone with a monoallelic TP53 mutation was identified in the initial stage of the disease.
- A subclone with a biallelic TP53 mutation and increased 1q21 copy number emerged during progression.
- Single-cell RNA sequencing revealed a PCL population with high CKS1B expression.

## Abstract

Secondary plasma cell leukemia (sPCL) is a rare, aggressive manifestation of multiple myeloma (MM). We report a 75‐year‐old Japanese man with anemia as the chief complaint and IgG‐λ MM that rapidly progressed to sPCL. Whole genome sequencing using Canopy revealed a major clone with a monoallelic TP53 mutation. During progression, a subclone with a biallelic TP53 mutation expanded, and the 1q21 copy number increased. Single‐cell RNA‐sequencing identified an emergent PCL population with high CKS1B expression. These data demonstrate genomic instability and clonal evolution during sPCL development, underscoring the need for approaches accounting for tumor heterogeneity in MM.

Trial Registration: The authors have confirmed clinical trial registration is not needed for this submission.

## Linked entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157], CKS1B (CDC28 protein kinase regulatory subunit 1B) [NCBI Gene 1163]
- **Diseases:** multiple myeloma (MONDO:0009693)

## Full-text entities

- **Genes:** CKS1B (CDC28 protein kinase regulatory subunit 1B) [NCBI Gene 1163] {aka CKS1, PNAS-16, PNAS-18, ckshs1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** tumor (MESH:D009369), Secondary Plasma Cell Leukemia (MESH:D007952), anemia (MESH:D000740), PCL (MESH:D008209), MM (MESH:D009101)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12800386/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12800386/full.md

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Source: https://tomesphere.com/paper/PMC12800386