# FAM117A and PIGU regulate the trilogy of gastric carcinogenesis

**Authors:** Nianzhi Chen, Yueqiang Wen, Qingsong Liu, Jing Du, Dan Yao, Maoyuan Zhao, Cui Guo, Tingyao Wang, Jia Ma, Jianyuan Tang, Yumei Wang, Jinhao Zeng

PMC · DOI: 10.1016/j.csbj.2025.08.036 · Computational and Structural Biotechnology Journal · 2025-09-07

## TL;DR

This study identifies FAM117A and PIGU as key regulators in gastric cancer progression, linking them to cell adhesion and p53 signaling.

## Contribution

The study discovers FAM117A and PIGU as novel regulatory factors in gastric carcinogenesis through multi-omics analysis.

## Key findings

- FAM117A and PIGU regulate p53 signaling and cell adhesion molecules like N-cadherin and E-cadherin.
- Abnormal cell proliferation and tumor metastasis are linked to FAM117A and PIGU activity in gastric cancer.
- FAM117A and PIGU are potential biomarkers and therapeutic targets for gastric cancer.

## Abstract

Gastric cancer (GC) develops through a multistep process; however, the molecular mechanisms driving the progression from normal gastric mucosa to precancerous lesions and ultimately to GC remain incompletely understood. Here, this study performed whole-transcriptome sequencing and ATAC-seq on normal gastric mucosa (N), gastric precancerous lesions (P), and gastric tumor tissues (T) to profile chromatin accessibility, lncRNAs, miRNAs, and mRNAs. Differential expression and KEGG pathway analyses identified key hub genes driving gastric carcinogenesis. A core competing endogenous RNA (ceRNA) network revealed critical regulatory lncRNAs for H19 and SNHG3. Through integrative analysis of ATAC-seq and whole-transcriptome sequencing, FAM117A and PIGU were identified as potential key regulatory factors. Experimental validation, including western blot, RT-qPCR, plasmid transfection and immunohistochemistry, confirmed FAM117A and PIGU as pivotal targets. Functional assays demonstrated that FAM117A and PIGU regulate the p53 signaling pathway and modulate cell adhesion molecules (N-cadherin and E-cadherin), highlighting their involvement in abnormal proliferation and tumor metastasis during GC progression. These findings identify FAM117A and PIGU as novel biomarkers and potential therapeutic targets, providing mechanistic insights into gastric carcinogenesis.

•FAM117A and PIGU regulate the trilogy of gastric carcinogenesis.•Cell adhesion molecules and abnormal cell proliferation are key mechanisms in the development of gastric cancer.•FAM117A and PIGU regulate the p53 signaling pathway and the expression of N-cadherin and E-cadherin.

FAM117A and PIGU regulate the trilogy of gastric carcinogenesis.

Cell adhesion molecules and abnormal cell proliferation are key mechanisms in the development of gastric cancer.

FAM117A and PIGU regulate the p53 signaling pathway and the expression of N-cadherin and E-cadherin.

## Linked entities

- **Genes:** FAM117A (family with sequence similarity 117 member A) [NCBI Gene 81558], PIGU (phosphatidylinositol glycan anchor biosynthesis class U) [NCBI Gene 128869], H19 (H19 imprinted maternally expressed transcript) [NCBI Gene 283120], SNHG3 (small nucleolar RNA host gene 3) [NCBI Gene 8420], CadN (Cadherin-N) [NCBI Gene 35070], shg (shotgun) [NCBI Gene 37386], TP53 (tumor protein p53) [NCBI Gene 7157]
- **Diseases:** gastric cancer (MONDO:0001056)

## Full-text entities

- **Genes:** CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, H19 (H19 imprinted maternally expressed transcript) [NCBI Gene 283120] {aka ASM, ASM1, BWS, D11S813E, GMRSP, LINC00008}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, PIGU (phosphatidylinositol glycan anchor biosynthesis class U) [NCBI Gene 128869] {aka CDC91L1, GAB1, GPIBD21, NEDBSS, PIG-U}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, FAM117A (family with sequence similarity 117 member A) [NCBI Gene 81558], SNHG3 (small nucleolar RNA host gene 3) [NCBI Gene 8420] {aka NCRNA00014, RNU17C, RNU17D, U17HG, U17HG-A, U17HG-AB}
- **Diseases:** GC (MESH:D013274), gastric precancerous lesions (MESH:D011230), gastric carcinogenesis (MESH:D063646), tumor metastasis (MESH:D009362)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12799953/full.md

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12799953/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12799953/full.md

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Source: https://tomesphere.com/paper/PMC12799953