# Development of a VHH that inhibits the binding of neuronal pentraxin 2 to a postsynaptic glutamate receptor, AMPAR

**Authors:** Takanori Yokoo, Makoto Nakakido, Keiko Matsuda, Jose M.M. Caaveiro, Jorge Fernandez-Perez, Michisuke Yuzaki, Kouhei Tsumoto

PMC · DOI: 10.1016/j.jbc.2025.110975 · The Journal of Biological Chemistry · 2025-11-25

## TL;DR

Researchers developed a specialized antibody that inhibits a protein involved in synapse formation, which could lead to new treatments for neurological disorders.

## Contribution

A high-affinity VHH was developed and characterized to inhibit NP2 binding to glutamate receptors.

## Key findings

- VHH N1 specifically binds to NP2 with high affinity.
- VHH N1 inhibits NP2's interaction with glutamate receptors in cells.
- X-ray crystallography revealed the binding mechanism of VHH N1 to NP2.

## Abstract

Neurons connect to each other via synapses to form neural circuits. Recent research has shown that neuropsychiatric disorders and neurological disorders, such as autism spectrum disorders and Alzheimer's disease, are synaptic diseases caused by abnormalities of synapses. Synaptic organizers are molecules responsible for synapse formation. Neuronal pentraxin 2 (NP2) is a synaptic organizer and a secreted protein that is expressed mainly in the hippocampus and cerebellum, and it contributes to synaptic plasticity. NP2 forms clusters with its family proteins, NP1 and neuronal pentraxin receptor, and binds to postsynaptic amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid–type receptors. In recent years, research has revealed the disease relevance of NP2. For example, it can be a biomarker of Alzheimer's disease, and its overexpression in the peripheral nervous system has been reported to cause chronic itch. However, the mechanism of NP2 function has not been well described at the molecular level. In this study, we developed a variable domain of a heavy-chain antibody (VHH) against NP2 to elucidate its molecular mechanism of action and to regulate its function of NP2. The obtained VHH N1 showed high specificity and affinity to NP2, and its binding mechanism was elucidated by X-ray crystallography. Furthermore, VHH N1 inhibited the binding of NP2 to amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid–type receptors, and this inhibitory activity was confirmed in cells. These results provide useful insights into the molecular mechanism of NP2 function and highlight the potential application of VHH N1 as a detection agent for NP2 or as a therapeutic agent for chronic itch.

## Linked entities

- **Proteins:** NPTX2 (neuronal pentraxin 2), NPTX1 (neuronal pentraxin 1)
- **Diseases:** Alzheimer's disease (MONDO:0004975)

## Full-text entities

- **Genes:** NPTX2 (neuronal pentraxin 2) [NCBI Gene 4885] {aka NARP, NP-II, NP2}, NPTX1 (neuronal pentraxin 1) [NCBI Gene 4884] {aka NP1, SCA50}, NPTXR (neuronal pentraxin receptor) [NCBI Gene 23467] {aka NPR}
- **Diseases:** AD (MESH:D000544), synaptic diseases (MESH:D012183), itch (MESH:D011537), autism spectrum disorders (MESH:D000067877), chronic (MESH:D002908), neurological disorders (MESH:D009461), neuropsychiatric disorders (MESH:D001523)
- **Chemicals:** VHH (-)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12799932/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12799932/full.md

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Source: https://tomesphere.com/paper/PMC12799932