# Machine learning prediction of multiple distinct high-affinity chemotypes for α-synuclein fibrils

**Authors:** Xinning Li, Ryann M. Perez, Zhude Tu, Robert H. Mach, Sam Giannakoulias, E. James Petersson

PMC · DOI: 10.1039/d5cc06228d · 2026-01-13

## TL;DR

A machine learning model predicted new high-affinity ligands for α-synuclein aggregates, useful for PET imaging.

## Contribution

A novel machine learning approach enabled ligand discovery with strong generalization from limited training data.

## Key findings

- Five high-affinity binders were experimentally validated from a large compound library.
- The model demonstrated robust generalization despite being trained on fewer than 300 binding measurements.
- Scaffold-guided curation improved the efficiency of ligand selection for testing.

## Abstract

To identify new ligands for positron emission tomography imaging of α-synuclein aggregates, we developed a machine learning model trained on <300 binding measurements. We used scaffold-guided curation to select a 30 compound prospective set from a 140-million-member library. Experimental validation yielded five high-affinity binders, showing robust generalization for ligand discovery.

Machine learning model predicts α-synuclein ligands.

## Full-text entities

- **Genes:** SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, LINC02605 (long intergenic non-protein coding RNA 2605) [NCBI Gene 112935892] {aka AS, IL-7, IL-7-AS}, TPO (thyroid peroxidase) [NCBI Gene 7173] {aka MSA, TDH2A, TPX}
- **Diseases:** LBD (MESH:D020961), neurodegenerative diseases (MESH:D019636), multiple system atrophy (MESH:D019578), synucleinopathies (MESH:D000080874), PD (MESH:D010300), ML (MESH:D007859), XL-MS (MESH:D009103), AD (MESH:D000544)
- **Chemicals:** BV-21 (-), thiadiazole (MESH:D013830), H (MESH:D006859), 125I (MESH:C000614960)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12797025/full.md

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Source: https://tomesphere.com/paper/PMC12797025