# Activation of TP53 target genes in the primary response of triple-negative breast cancer cells to doxorubicin treatment

**Authors:** Aysan Shekari, Yaghub Pazhang, Hamid Maadi

PMC · DOI: 10.1038/s41598-025-31087-x · Scientific Reports · 2025-12-04

## TL;DR

This study shows that TP53 target genes are activated in triple-negative breast cancer cells when treated with doxorubicin, but not in resistant cells, suggesting a key role in treatment response.

## Contribution

The study identifies distinct molecular mechanisms in TP53 target gene activation between sensitive and resistant TNBC cells to DNA-damaging drugs.

## Key findings

- Doxorubicin significantly upregulates TP53 target genes like CDKN1A, TIGAR, and TP53INP1 in TNBC cells.
- Doxorubicin-resistant cells fail to upregulate most TP53 target genes except CDKN1A.
- Etoposide increases expression of some TP53 target genes in a TP53-independent manner.

## Abstract

Among the DNA-damaging agents commonly used in clinical settings doxorubicin has emerged as one of the most effective treatments for Triple-negative breast cancer (TNBC). Our limited understanding about the molecular mechanisms underlying the short- and long-term responses of TNBC cells to DNA damage induced by drugs like doxorubicin is a hurdle to improve the efficacy of the treatment or overcome the drug resistance. In this study, we aimed to elucidate the immediate response of the TNBC cells to doxorubicin and compare these responses with those of doxorubicin-resistant cells through transcriptome analysis. Transcriptome analysis revealed that doxorubicin significantly upregulates the expression of TP53 target genes, including CDKN1A, TIGAR, TP53INP1, PPM1D, and ACER2. Notably, doxorubicin-resistant TNBC cells failed to increase the expression of these genes, except for CDKN1A, upon doxorubicin treatment. Moreover, treatment with etoposide as another DNA-damaging drug increased the expression of CDKN1A, TP53INP1, and ACER2 in a TP53-independent manner. Collectively, this study highlights the critical role of TP53 target genes in the immediate response of TNBC cells to DNA-damaging agents like doxorubicin and etoposide. It also reveals distinct molecular mechanisms regulating their expression in resistant versus sensitive cells, offering potential therapeutic targets to improve treatment strategies for TNBC.

## Linked entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157], CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], TIGAR (TP53 induced glycolysis regulatory phosphatase) [NCBI Gene 57103], TP53INP1 (tumor protein p53 inducible nuclear protein 1) [NCBI Gene 94241], PPM1D (protein phosphatase, Mg2+/Mn2+ dependent 1D) [NCBI Gene 8493], ACER2 (alkaline ceramidase 2) [NCBI Gene 340485]
- **Chemicals:** doxorubicin (PubChem CID 31703), etoposide (PubChem CID 36462)
- **Diseases:** Triple-negative breast cancer (MONDO:0005494), breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** ACER2 (alkaline ceramidase 2) [NCBI Gene 340485] {aka ALKCDase2, ASAH3L}, TP53INP1 (tumor protein p53 inducible nuclear protein 1) [NCBI Gene 94241] {aka SIP, TP53DINP1, TP53INP1A, TP53INP1B, Teap, p53DINP1}, TIGAR (TP53 induced glycolysis regulatory phosphatase) [NCBI Gene 57103] {aka C12orf5, FR2BP}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, PPM1D (protein phosphatase, Mg2+/Mn2+ dependent 1D) [NCBI Gene 8493] {aka IDDGIP, JDVS, PP2C-DELTA, WIP1}, CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026] {aka CAP20, CDKN1, CIP1, MDA-6, P21, SDI1}
- **Diseases:** TNBC (MESH:D064726)
- **Chemicals:** doxorubicin (MESH:D004317), etoposide (MESH:D005047)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12796491/full.md

## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12796491/full.md

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Source: https://tomesphere.com/paper/PMC12796491