# Gut microbiota metabolite butyric acid alleviated Klebsiella Pneumoniae induced lung injury by regulating CX3CR1+NK via PI3K/AKT pathway

**Authors:** Sucheng Mu, Meijia Chang, Yongqi Shen, Xingyue Wu, Yi Han, Hao Xiang, Yue Luo, Yao Chen, Huajun Zheng, Zhenju Song, Chaoyang Tong

PMC · DOI: 10.1093/burnst/tkaf069 · Burns & Trauma · 2025-10-29

## TL;DR

Butyric acid, a gut microbiota metabolite, helps reduce lung injury from Klebsiella pneumoniae infection by boosting CX3CR1+ NK cells through the PI3K/AKT pathway.

## Contribution

This study identifies butyric acid as a key gut microbiota metabolite that regulates CX3CR1+ NK cells to alleviate lung injury during sepsis.

## Key findings

- Butyric acid increased CX3CR1+ NK cells and IFN-γ secretion while reducing bacterial loads in mice.
- FMT restored microbiota and metabolites, improving survival and reducing lung injury in infected mice.
- In vitro, butyric acid activated the PI3K/AKT pathway in NK92 cells, enhancing NK cell activity and migration.

## Abstract

The expression of CX3CR1 is regulated by the gut microbiota and is correlated with the prognosis of sepsis in patients. However, the underlying mechanism has remained uncertain. This study aims to explore the role of gut microbiota components in regulating CX3CR1 expression and its impact on pneumonia-induced lung injury during sepsis.

Mice were fed a mixture of antibiotics to establish a pseudogerm-free mouse model and then infected with Klebsiella pneumoniae. Fecal microbiota transplantation (FMT) was performed on microbiota-depleted mice, and 16S rRNA gene sequencing and targeted metabolomics were used to identify the key metabolites. Flow cytometry was employed to analyze the phenotypes of natural killer (NK) cells. Butyric acid was added as a supplement for rescue. Next, NK92 cells were pretreated with butyric acid to explore the potential signaling pathways involved.

In the animal study, we revealed that the expression of CX3CR1 on NK cells depended on the intestinal microbiota and its metabolites, which were related to the survival rates of gut microbiota-depleted mice after K. pneumoniae infection. FMT increased the percentage of CX3CR1+ NK cells in the lungs of these mice, restored the disordered microbiota and metabolites, and alleviated the lung injury induced by infection. Among the metabolites, butyric acid was identified as the key metabolite and was shown to increase the proportion of CX3CR1+ NK cells and interferon (IFN)-γ secretion, reduce bacterial loads, increase lung tissue damage, and increase survival rates. In vitro, butyric acid activated the PI3K/AKT pathway in NK92 cells, promoted CX3CR1 expression, and enhanced NK cell activity and migration ability.

We concluded that butyric acid alleviated K. pneumoniae-induced lung injury by regulating CX3CR1+ NK cells via the PI3K/AKT pathway.

## Linked entities

- **Genes:** CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524]
- **Chemicals:** butyric acid (PubChem CID 264)
- **Species:** Klebsiella pneumoniae (taxon 573), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Anxa5 (annexin A5) [NCBI Gene 11747] {aka Anx5, CPB-I}, Cd19 (CD19 antigen) [NCBI Gene 12478], HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Blnk (B cell linker) [NCBI Gene 17060] {aka BASH, Bca, Ly-57, Ly57, Lyw-57, SLP-65}, CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524] {aka CCRL1, CMKBRL1, CMKDR1, GPR13, GPRV28, V28}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Cx3cl1 (C-X3-C motif chemokine ligand 1) [NCBI Gene 20312] {aka ABCD-3, CX3C, Cxc3, D8Bwg0439e, FK, Scyd1}, Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, Klrb1c (killer cell lectin-like receptor subfamily B member 1C) [NCBI Gene 17059] {aka CD161, Klrb1b, Ly-59, Ly55c, Ly59, NK-RP1}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Il22 (interleukin 22) [NCBI Gene 50929] {aka IL-22, IL-22a, ILTIFa, If2b1, Iltif}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 20296] {aka HC11, JE, MCAF, MCP-1, MCP1, SMC-CF}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Cort (cortistatin) [NCBI Gene 12854] {aka CST, PCST}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Cx3cr1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 13051] {aka mCX3CR1}, Klrg1 (killer cell lectin-like receptor subfamily G, member 1) [NCBI Gene 50928] {aka 2F1-Ag, MAFA, MAFA-L}
- **Diseases:** infected (MESH:D007239), lung injury (MESH:D055370), Sepsis (MESH:D018805), multiple organ dysfunction syndrome (MESH:D009102), natural killer (MESH:D000077428), lymphoma (MESH:D008223), cytotoxicity (MESH:D064420), intestinal injury (MESH:D007410), septic (MESH:D001170), death (MESH:D003643), K. pneumoniae (MESH:D011014), inflammation (MESH:D007249), Klebsiella Pneumoniae (MESH:D007710)
- **Chemicals:** fatty acid (MESH:D005227), ampicillin (MESH:D000667), neomycin (MESH:D009355), butyrate (MESH:D002087), metronidazole (MESH:D008795), sodium hydroxide (MESH:D012972), alpha_linolenic acid (MESH:D017962), arachidonic acid (MESH:D016718), propanoic acid (MESH:C029658), hydrochloric acid (MESH:D006851), sugars (MESH:D000073893), Avertin (MESH:C062527), methanol (MESH:D000432), amino acids (MESH:D000596), agarose (MESH:D012685), CSNpharm (-), ACN (MESH:C084683), zirconia (MESH:C028541), Butyric acid (MESH:D020148), short-chain fatty acid (MESH:D005232), BA (MESH:D001464), Dextran (MESH:C015219), vancomycin (MESH:D014640), amines (MESH:D000588), DHA (MESH:D004281), 11_cis_eicosenoic acid (MESH:C572289), carbohydrates (MESH:D002241), acid (MESH:D000143), CO2 (MESH:D002245), PBS (MESH:D007854), palmitoleic acid (MESH:C008757), oleic acid (MESH:D019301), bile acids (MESH:D001647), SYBR Green (MESH:C098022), CCK-8 (MESH:D012844), water (MESH:D014867)
- **Species:** Clostridium butyricum (species) [taxon 1492], Enterococcus (genus) [taxon 1350], Mus musculus (house mouse, species) [taxon 10090], Parabacteroides (genus) [taxon 375288], Parasutterella (genus) [taxon 577310], Klebsiella pneumoniae (species) [taxon 573], Homo sapiens (human, species) [taxon 9606], Bacteroides (genus) [taxon 816], Lactobacillus (genus) [taxon 1578]
- **Cell lines:** YAC-1 — Mus musculus (Mouse), Mouse lymphoma, Cancer cell line (CVCL_2244), natural — Rattus norvegicus (Rat), Rat large granular lymphocyte leukemia, Cancer cell line (CVCL_F856), NK-92 — Homo sapiens (Human), Natural killer cell lymphoblastic leukemia/lymphoma, Cancer cell line (CVCL_2142)

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## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12794618/full.md

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Source: https://tomesphere.com/paper/PMC12794618