# Re-sequencing of the complete chloroplast genome of Cinnamomum burmanni (Nees & T.Nees) Blume (Lauraceae) from Indonesia using MinION Oxford Nanopore Technologies

**Authors:** Richard Andreas Salindeho, Fifi Gus Dwiyanti, Rahadian Pratama, Deden Derajat Matra, Muhammad Majiidu, Iskandar Z. Siregar, Jakub Sawicki, Richard Salindeho, Hoang Dang Khoa Do, Richard Salindeho

PMC · DOI: 10.12688/f1000research.145790.1 · F1000Research · 2024-02-20

## TL;DR

This study sequenced and annotated the complete chloroplast genome of Cinnamomum burmanni from Indonesia for the first time.

## Contribution

The first complete chloroplast genome assembly and annotation for Cinnamomum burmanni using MinION Nanopore sequencing.

## Key findings

- The chloroplast genome is 152,765 bp long with a GC content of 39%.
- It contains 173 unique genes, including 96 protein-coding, 19 rRNA, and 68 tRNA genes.
- The genome is divided into LSC, SSC, and two IR regions.

## Abstract

Cinnamomum burmanni (Nees & T.Nees) Blume (Lauraceae) belongs to the Magnoliids group and is mainly distributed in Indonesia and Southeast Asia. The complete chloroplast (cp) genome of
C. burmanni sampled from Indonesia was assembled and annotated for the first time in this study. The length of the cp genome is 152,765 bp with a GC content of 39%, and it consists of four subregions: a large single-copy (LSC) region of 93,636 bp, a small single-copy (SSC) region of 18,893 bp and two inverted repeats (IR) regions (IRA 20,121 bp; IRB 20,115 bp) . The cp genome of
C. burmanni encodes a total of 173 unique genes, which are 96 protein-coding genes, 19 rRNA genes, and 68 tRNA genes that can be utilized for advanced genetic and genomic studies of the species.

## Linked entities

- **Species:** Cinnamomum burmanni (taxon 119261), Lauraceae (taxon 3433)

## Full-text entities

- **Genes:** rps12 [NCBI Gene 101172123]
- **Diseases:** diabetic (MESH:D003920), inflammatory (MESH:D007249), cancer (MESH:D009369)
- **Chemicals:** cinnamaldehyde (MESH:C012843), steroids (MESH:D013256), phenols (MESH:D010636), flavonoids (MESH:D005419), mercaptoethanol (MESH:D008623), saponins (MESH:D012503), alkaloids (MESH:D000470), eugenol (MESH:D005054), coumarins (MESH:D003374), Buffer AP1 (-), tannins (MESH:D013634)
- **Species:** Cinnamomum verum (Ceylon cinnamon, species) [taxon 128608], Coleophora burmanni (species) [taxon 1857987]

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12790596/full.md

## References

11 references — full list in the complete paper: https://tomesphere.com/paper/PMC12790596/full.md

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Source: https://tomesphere.com/paper/PMC12790596