Bartonella Endocarditis in a Pediatric Patient With Aortic Valvular Disease and Embolic Stroke: A Case Report and Review of the Literature
Omoadoni D Emeagui, Gitanjali Rebello, Rafay A Afzal, Kendria C Hall, Rebecca E Pratt, Karl O. A Yu

TL;DR
A 12-year-old boy with a heart valve condition developed a rare Bartonella infection causing endocarditis and stroke, diagnosed using advanced DNA testing and successfully treated with adjusted antibiotics.
Contribution
Demonstrates the utility of microbial cell-free DNA testing in diagnosing culture-negative Bartonella endocarditis in a pediatric patient.
Findings
Bartonella henselae endocarditis was diagnosed using plasma microbial cell-free DNA testing in a patient with culture-negative results.
Second-line antimicrobials led to significant clinical improvement and neurological recovery within three weeks.
The case highlights the importance of advanced diagnostic methods for challenging infections in pediatric cardiology.
Abstract
Culture-negative endocarditis leading to embolic stroke is a rare clinical etiology in pediatrics. This is a case of a 12-year-old male with a history of bicuspid aortic valve and mild asymptomatic aortic stenosis who presented with flu-like symptoms, right-sided hemiplegia, and aphasia. Although he initially presented with symptoms of arterial ischemic stroke, he was found to have infective endocarditis (IE) secondary to Bartonella henselae, confirmed by echocardiogram and plasma microbial cell-free DNA (mcf-DNA) testing. Initial antimicrobial treatment per standard guidelines was unsuccessful. Hence, second-line antimicrobials were commenced, to which he responded appropriately. His clinical course markedly improved, with recovery of neurological function within three weeks. He continued treatment of endocarditis and bartonellosis in an outpatient setting with significant clinical…
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Figure 1
Figure 2
Figure 3| Test | Result | Reference range |
| Procalcitonin | 1.3 ng/mL | 0.02-0.09 ng/mL |
| C-reactive protein | 123 mg/L | 0.02-10 mg/L |
| White blood count | 4,600 cells/µL | 4,000-11,000 cells/µL |
| Neutrophils | 46% | 40-60% |
| Lymphocytes | 35% | 20-40% |
| Monocytes | 16% | 2-8% |
| Eosinophils | 2% | 0-5% |
| Hemoglobin | 9.3 g/dL | 11-15 g/dL |
| Mean corpuscular volume | 73 fL | 80-100 fL |
| Platelets | 105 ×10⁹/L | 150-450 ×10⁹/L |
| B-type natriuretic peptide | 1,494 pg/mL | <100 pg/mL |
| D-dimer | 3.54 mg/L | <0.5 mg/L |
| Troponin | 0.32 ng/mL | <0.04 ng/mL |
| Respiratory viral panel PCR | Negative for rhinovirus, metapneumovirus, adenovirus, parainfluenza 1-4, RSV, influenza A and B, and SARS-CoV-2 | Not applicable |
|
Nasal methicillin-resistant | Negative | Not applicable |
| Blood cultures |
Negative on eight aerobic and four anaerobic bottles; one aerobic bottle grew coagulase-negative | Not applicable |
| Brucella IgG | Negative | <1:160 |
| Q fever (IgG/IgM) | Negative | <1:100 |
| Babesia IgG | Negative | <1:64 |
| Anaplasma IgG | Negative | <1:64 |
| Ehrlichia IgG | Negative | <1:64 |
| Lyme screen | Positive | Not applicable |
| Lyme IgG/IgM | Negative | Not applicable |
| Plasma microbial cell-free DNA (Karius) |
| <10 DNA molecules/µL |
| Week | IgG titer | Reference range | IgM titer | Reference range |
| 1 | >1:2560 | <1:320 | Negative | <1:100 |
| 3 | >1:2560 | <1:320 | Negative | <1:100 |
| 9 | 1:2560 | <1:320 | Negative | <1:100 |
| Week | IgG titer | Reference range | IgM titer | Reference range |
| 13 | 1:256 | <1:64 | Negative | <1:100 |
| 16 | 1:512 | <1:64 | Negative | <1:100 |
| 31 | 1:512 | <1:64 | Negative | <1:100 |
| 36 | 1:256 | <1:64 | Negative | <1:100 |
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Taxonomy
TopicsBartonella species infections research · Infective Endocarditis Diagnosis and Management · Rabies epidemiology and control
Introduction
Infective endocarditis (IE) is an infection involving the endocardial lining of the heart, most commonly affecting the heart valves (native or prosthetic) or implanted cardiac devices, caused by pathogenic microorganisms of bacterial, viral, or fungal origin [1,2]. IE occurs less frequently in children than in adults but is associated with significant morbidity and mortality due to its often atypical presentation, prolonged course of treatment, and potential for severe complications [2]. The clinical picture of IE may be insidious, with fever, night sweats, a new cardiac murmur, and weight loss often being the only presenting symptoms [2]. Several hallmark signs, such as Janeway lesions, Osler nodes, splinter hemorrhages, and Roth spots, may also be present [2,3]. The modified Duke Criteria, which comprise clinical, imaging, and bacteriological findings, are the standard for diagnosis [4,5]. IE usually occurs in two forms: acute IE, which develops suddenly and may become life-threatening within days, and subacute or chronic IE, which develops slowly over weeks to several months [4,5].
The primary approach to diagnosing IE relies on culture-based methods. However, 20% of cases are blood culture-negative endocarditis (BCNIE), presenting a major diagnostic challenge in clinical practice and resulting in delayed diagnosis with increased risk of morbidity and mortality [4-6]. Prior antibiotic use accounts for 35-74% of the prevalence of BCNIE [7]. Therefore, recent advances have led to the development of non-culture-based diagnostics capable of identifying specific underlying microbes in blood culture-negative cases, thereby refining treatment regimens [7].
Serological assays such as indirect fluorescent antibody tests, enzyme-linked immunosorbent assays, and complement fixation tests have proven valuable in detecting fastidious organisms or pathogens that fail to grow in standard culture conditions [7,8]. Recent reports indicate that indirect immunofluorescence assays successfully identified organisms such as *Coxiella burnetii *[8].
Advanced molecular diagnostic methods have significantly improved the detection of IE [9]. These include organism-specific PCR assays, broad-range PCR targeting conserved regions such as the bacterial 16S rRNA gene, targeted metagenomic sequencing, and shotgun metagenomics [6,7,9]. The Karius test, developed by Karius, Inc. (Redwood City, CA, USA), detects microbial cell-free DNA (mcf-DNA) by next-generation sequencing from plasma. Recent studies suggest that mcf-DNA testing reliably identifies causative pathogens in cases of culture-negative IE, making the Karius test a valuable diagnostic tool in BCNIE [7,9].
*Bartonella *is a commonly reported cause of BCNIE. *Bartonella henselae *is often transmitted to humans by cats or dogs through scratches contaminated with feces from B. henselae-infected fleas [2]. When treating *B. henselae *infections, the IDSA recommends doxycycline or erythromycin monotherapy for bacteremia or osteomyelitis and dual therapy with doxycycline and rifampin for CNS infections or confirmed *Bartonella *endocarditis, with a total duration of therapy extending up to three months [10].
IE occurs less frequently in children than in adults [2]. In pediatric cases, the primary predisposing factor is congenital heart disease (CHD), while other notable risk factors include rheumatic heart disease (RHD) and bacteremia resulting from hospital-acquired infections [2]. However, with the increased use of invasive medical procedures and prolonged central venous catheter placement, the incidence of IE among individuals without pre-existing heart disease has been rising [10,11].
Among the complications of IE, stroke remains one of the most concerning, usually resulting from occlusion of intracerebral vessels following embolization of endocardial vegetations [12,13]. Here, we present a case of a child with a history of bicuspid aortic valve with aortic stenosis (no prior interventions) who developed and was treated for systemic *B. henselae *infection with endocarditis complicated by cerebrovascular disease.
Case presentation
An early adolescent boy with a past medical history of bicuspid aortic valve and aortic stenosis presented with a history of fever, cough, and cold two weeks prior, followed by features of an acute embolic stroke. He was referred from an outlying emergency department. He had recovered from his upper respiratory tract symptoms when he developed confusion, mild drooping of the right side of his mouth, and numbness in his right upper arm and leg. His initial brain CT scan was normal, but his symptoms progressed, prompting referral to a tertiary care children’s hospital for further management.
A repeat CT with contrast showed large acute ischemic changes in the left middle cerebral artery territory. He was admitted for supportive management, as he was outside the thrombolytic window. Although he had been fever-free for 10 days prior to presentation, he was febrile at admission. History was notable for residing in a Lyme-endemic area, but he had no recent travel, camping history, or exposure to cats or dogs. There was no significant family history.
On examination, he was tachycardic, normotensive, and febrile, with petechiae and Janeway lesions on the bilateral palms and soles. Cardiac auscultation revealed a systolic ejection murmur at the right upper sternal border. Neurologic examination demonstrated verbal apraxia, right hemiparesis, right upper motor neuron facial nerve palsy, and right hypoglossal nerve palsy, with the tongue deviating to the right.
Investigations
Laboratory investigations and antibiotic therapy are documented in Table 1, Table 2, Table 3, Figure 1, and Figure 2. Echocardiography revealed vegetations on the aortic valve (Figure 3), fulfilling one of the two major diagnostic criteria for IE. Additional findings included new moderate aortic regurgitation, a mildly dilated left ventricle, but preserved systolic function. IV contrast abdominal CT demonstrated moderate splenomegaly with multiple small lesions suggestive of infarcts.
Chronology of the antibiotic regimen
Trends of white blood cell count, absolute neutrophil count, and C-reactive protein
Two-dimensional parasternal long-axis echocardiogram showing large vegetation on the aortic valve (blue arrow)
The second major diagnostic criterion for IE is microbiologic evidence, either a positive blood culture or PCR. Plasma mcf-DNA testing (Karius) was sent after multiple negative blood cultures and returned positive for *B. henselae *DNA, correlating with significantly elevated antibody titers to B. henselae. With positive findings on both imaging and mcf-DNA testing, he fulfilled the two major criteria for IE according to the 2023 Duke-ISCVID criteria [6].
Differential diagnosis and treatment
At presentation, the patient was started empirically on ceftriaxone, vancomycin, acyclovir, and doxycycline in view of acute stroke with fever, living in a Lyme-endemic area. Once herpes encephalitis and the likelihood of methicillin-resistant Staphylococcus aureus infection were ruled out, acyclovir and vancomycin were discontinued within 24 hours. He continued on ceftriaxone and doxycycline until day 6, when he developed neutropenia. Ceftriaxone was discontinued due to concerns of beta-lactam-associated neutropenia, and rifampin was added. He tolerated the combination of doxycycline and rifampin well.
After an initial decrease, his C-reactive protein (CRP) rose, raising concerns for therapy failure, as both doxycycline and rifampin are primarily bacteriostatic. On hospital day 9, rifampin was replaced with low-dose gentamicin at 3 mg/kg/day. Despite this adjustment, CRP continued to increase, prompting escalation of gentamicin to 7.5 mg/kg/day and addition of ceftazidime at 100 mg/kg/day on day 11.
Outcome and follow-up
Following the increase in gentamicin dose and addition of ceftazidime, CRP began to decline, accompanied by progressive improvement in neurologic deficits and stabilization of the aortic valve vegetation. Gentamicin was discontinued on day 16, completing two weeks of IV bactericidal therapy. He was discharged on hospital day 21 on oral doxycycline and IV ceftazidime via peripherally inserted central catheter.
At home, he developed emesis with doxycycline, prompting a switch to daily azithromycin for a long-term course of four to five months to treat endocarditis. Ceftazidime was stopped on treatment day 30 after he developed a second episode of neutropenia (nadir 500 cells/mm³). He received filgrastim (granulocyte colony-stimulating factor), resulting in recovery of his neutrophil count. Daily azithromycin was reduced to thrice weekly due to persistent hiccups and abdominal pain, which he tolerated well.
Two weeks before completing therapy, imaging revealed significant aortic regurgitation, prompting urgent aortic valve replacement with a 25 mm St. Jude prosthetic valve. Azithromycin was continued for two additional weeks post-surgery, totaling 4.5 months of therapy. Six months post-operation, he remained stable and had regained his baseline weight.
Discussion
This patient’s case is particularly notable as he developed systemic bartonellosis with endocarditis in the setting of CHD, presenting with an ischemic stroke. IE is less common in children than in adults, with an incidence of 0.43 to 0.69 per 100,000 in children [2]. The primary predisposing factors for IE in children include CHD, RHD, and bacteremia resulting from hospital-acquired infections associated with intravascular devices such as central venous catheters and pacing leads [2,10]. This patient had an elevated risk for IE due to his aortic valvular defects [11]. Approximately 50-70% of pediatric IE cases occur in patients with CHD [11]. This contrasts with adult patients, in whom the most common predisposing heart conditions include degenerative valve disease or prosthetic valve implantation [11].
There is increasing evidence that IE is a significant risk factor for stroke, as seen in this patient [11,12]. In the setting of endocarditis with acute stroke, efforts should focus on minimizing the risk of subsequent cerebral infarcts and, if possible, addressing the underlying pathology of the embolic source. The risk of embolism in endocarditis has been reported to be as high as 10-50%. Specific factors have been identified that elevate the risk of acute ischemic stroke in IE [12,14]. These include a previous history of stroke, infection caused by *Staphylococcus *species, presence of vegetations on the mitral valve, particularly on the anterior leaflet, multivalvular involvement, valvular abscess formation, and vegetations measuring greater than 10 mm in length [12,14].
Valenzuela et al. reported that patients with vegetations larger than 10 mm had a 57% risk of embolic events, compared to 22% for those with vegetations smaller than 10 mm [14]. Additionally, mobile vegetations carried a 48% risk of embolism, compared to 9% for fixed vegetations [14]. These findings are closely linked to vegetation size, as larger vegetation is more likely to be mobile [14]. Consequently, both larger and more mobile vegetations significantly increase the risk of arterial ischemic stroke in patients with IE due to their higher propensity to fragment and embolize [13,14].
BCNIE posed a significant challenge in this case, as long-term mortality has been reported to be higher than in culture-positive endocarditis patients. Plasma mcf-DNA testing has been shown to identify causative pathogens in bacterial bloodstream infections earlier and for a significantly longer duration than conventional blood cultures [6,9]. Although the Karius test demonstrates a clinical sensitivity of 93.7% across various pathogens, its clinical specificity is lower, at 40%. The likelihood of a correct result in this patient was increased, given his exposure to kittens and the fact that* B. henselae* is a common cause of BCNIE [15-17].
Systemic bartonellosis is difficult to treat. Our patient did not respond adequately to the recommended first-line options: doxycycline and rifampin. In vitro studies by Rolain et al. suggest that gentamicin is bactericidal against B. henselae, whereas ceftriaxone, a conventional bactericidal antibiotic, is bacteriostatic against *B. henselae *[18]. Studies in adults with *Bartonella *endocarditis have shown improvement with no relapse or persistent disease in patients undergoing early surgical management [18]. Similar reports in the pediatric population are limited, where additional concerns include an increased likelihood of future valve replacements. Vegetations in *Bartonella *endocarditis have been found to be more fibrotic, calcific, and less vascularized, causing structural valve damage even after a reduction in size, which may support early surgical intervention [19,20].
Conclusions
The diagnosis and management of blood culture-negative IE remain challenging and are often associated with significant morbidity. mcf-DNA testing has proven valuable for achieving an early and accurate microbiologic diagnosis, thereby guiding appropriate antimicrobial therapy. Treatment typically requires a prolonged course of multiple antibiotics, which may predispose patients to antibiotic-related adverse effects. Vegetation caused by B. henselae can compromise the structural integrity of the aortic valve, potentially resulting in aortic regurgitation severe enough to require valve replacement.
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