# Network pharmacology and in vitro studies demonstrate modulation of fibrotic pathways by Swertia chirayita in pulmonary fibrosis

**Authors:** Bharath H. B., Farmiza Begum, Gautam Kumar, Jyothi Giridhar, Usha Y. Nayak, Fayaz S. M., Pawan Ganesh Nayak, Yogendra Nayak

PMC · DOI: 10.1038/s41598-025-30784-x · Scientific Reports · 2025-12-08

## TL;DR

This study shows that Swertia chirayita may treat pulmonary fibrosis by targeting the TNF-α signaling pathway and reducing fibrotic processes.

## Contribution

The study combines network pharmacology and in vitro experiments to reveal how Swertia chirayita modulates fibrotic pathways via TNF-α signaling.

## Key findings

- Swertia chirayita components inhibit fibroblast migration and epithelial to mesenchymal transition.
- Key compounds like bellidifolin and gentiopicroside show strong anti-fibrotic effects through molecular interactions.
- In vitro results confirm that SC modulates TNF-α signaling and downstream markers like NF-κB.

## Abstract

Various biological processes contribute to pulmonary fibrosis, which results in fibrotic foci that impede the exchange of gases between alveoli and capillaries. This study investigates the therapeutic mechanism in fibrotic foci reconfiguring via the TNF signaling pathway by potential Swertia chirayita (SC) components to treat pulmonary fibrosis by network pharmacology, in silico, and in vitro studies. The targets of LC-MS/MS analyzed SC components were used to build a protein-protein interaction network in Cytoscape and predicted key targets and signalings. The molecular docking, dynamics (MD) simulation, and principal component analysis (PCA) were performed to predict the potential interactions between components and their targets. In vitro studies, such as cell migration, E-cadherin immune fluorescence assay, and western blot analysis were performed in NIH3T3 and A549 cells with or without TGFβ1 stimulation. The network pharmacology of SC revealed nine key targets, and the pathway analysis found that these targets are implicated in TNF-α signaling. The main components of SC have substantial binding affinities, as shown by molecular docking. Furthermore, MD simulation and PCA predict that bellidifolin, gentiopicroside, and mangiferin will substantiate the anti-fibrotic effect. SC inhibited fibroblast migration and differentiation, epithelial to mesenchymal transition, and TNF-α downstream markers like NF-κB/p-NF-κB. In vitro studies confirmed the network pharmacology and docking predictions that SC can modulate fibrotic foci by acting through the TNF-α signaling pathway.

The online version contains supplementary material available at 10.1038/s41598-025-30784-x.

## Linked entities

- **Proteins:** TNF (tumor necrosis factor), NFKB1 (nuclear factor kappa B subunit 1), shg (shotgun)
- **Chemicals:** bellidifolin (PubChem CID 5281623), gentiopicroside (PubChem CID 88708), mangiferin (PubChem CID 5281647)
- **Diseases:** pulmonary fibrosis (MONDO:0002771)

## Full-text entities

- **Genes:** Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Cdh1 (cadherin 1) [NCBI Gene 12550] {aka ARC-1, E-cad, Ecad, L-CAM, UVO, Um}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}
- **Diseases:** pulmonary fibrosis (MESH:D011658)
- **Chemicals:** mangiferin (MESH:C013592), gentiopicroside (MESH:C012997), bellidifolin (MESH:C091291)
- **Cell lines:** A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), NIH3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594)

## Full text

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## Figures

14 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12789668/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12789668/full.md

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Source: https://tomesphere.com/paper/PMC12789668