# Genetic variations in extracellular matrix degradation pathways linking to major depressive disorder: Evidence from a large-scale genetic association study

**Authors:** Halliru Zailani, Daniel Tzu-Li Chen, Sheng-Che Lin, Jia-Hau Lee, Mei-Ling Li, Jane Pei-Chen Chang, Kuan-Pin Su

PMC · DOI: 10.37796/2211-8039.1677 · BioMedicine · 2025-12-01

## TL;DR

This study finds genetic variations in extracellular matrix degradation pathways are linked to major depressive disorder, offering new potential biomarkers for diagnosis and treatment.

## Contribution

The first genetic evidence linking ECM degradation pathways to MDD susceptibility is presented.

## Key findings

- 12 SNPs across 10 ECM-related genes were significantly associated with MDD.
- These findings suggest ECM pathways may play a role in the development of MDD.
- The study identifies potential novel biomarkers for early diagnosis and precision therapy.

## Abstract

Dysregulation of extracellular matrix (ECM) degradation pathways has been increasingly implicated in major depressive disorder (MDD), yet its genetic basis remains unclear. This study investigated the relationship between ECM-related genetic polymorphisms and MDD susceptibility. In a case-control study, we analyzed 317 MDD patients and 1268 sexmatched controls from the Taiwan Biobank (TWB). Genomic DNA was analyzed using the Affymetrix TWB array, targeting single nucleotide polymorphisms (SNPs) in 140 ECM degradation genes (Reactome database). Full-model association tests identified significant SNPs, validated with 5000 max(T) permutations and adjusted via logistic regression for age, body mass index, education level, and marital status. We identified 12 SNPs across 10 ECMrelated genes significantly associated with MDD, including ADAM metallopeptidase domain 17 (ADAM17, rs55820761), brevican (BCAN, rs11264511), CD44 molecule (CD44, rs12270356), collagen type XVII alpha 1 chain (COL17A1; rs2282436 and rs10883962), collagen type III alpha 1 chain (COL3A1; rs16830979 and rs10883962), collagen type VI alpha 6 chain (COL6A6, rs16830219), cathepsin L (CTSL, rs2274611), Kallikrein-related peptidase 2 (KLK2, rs2664156), matrix metallopeptidase 11 (MMP11, rs738791), and nicastrin (NCSTN, rs3753391). This study provides the first genetic evidence linking ECM degradation pathways to MDD susceptibility, identifying novel biomarkers for early diagnosis and precision therapy. Further research and cross-population studies are needed to confirm these findings.

## Linked entities

- **Genes:** ADAM17 (ADAM metallopeptidase domain 17) [NCBI Gene 6868], BCAN (brevican) [NCBI Gene 63827], CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960], COL17A1 (collagen type XVII alpha 1 chain) [NCBI Gene 1308], COL3A1 (collagen type III alpha 1 chain) [NCBI Gene 1281], COL6A6 (collagen type VI alpha 6 chain) [NCBI Gene 131873], CTSL (cathepsin L) [NCBI Gene 1514], KLK2 (kallikrein related peptidase 2) [NCBI Gene 3817], MMP11 (matrix metallopeptidase 11) [NCBI Gene 4320], NCSTN (nicastrin) [NCBI Gene 23385]
- **Diseases:** major depressive disorder (MONDO:0002009)

## Full-text entities

- **Genes:** BCAN (brevican) [NCBI Gene 63827] {aka BEHAB, CSPG7}, KLK2 (kallikrein related peptidase 2) [NCBI Gene 3817] {aka KLK2A2, hGK-1, hK2}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, COL6A6 (collagen type VI alpha 6 chain) [NCBI Gene 131873], CTSL (cathepsin L) [NCBI Gene 1514] {aka CATL, CTSL1, MEP}, MMP11 (matrix metallopeptidase 11) [NCBI Gene 4320] {aka SL-3, ST3, STMY3}, NCSTN (nicastrin) [NCBI Gene 23385] {aka ATAG1874}, ADAM17 (ADAM metallopeptidase domain 17) [NCBI Gene 6868] {aka ADAM18, CD156B, CSVP, HYPT16, NISBD, NISBD1}, COL3A1 (collagen type III alpha 1 chain) [NCBI Gene 1281] {aka EDS4A, EDSVASC, PMGEDSV}, COL17A1 (collagen type XVII alpha 1 chain) [NCBI Gene 1308] {aka BA16H23.2, BP180, BPA-2, BPAG2, ERED, JEB4}
- **Diseases:** MDD (MESH:D003865)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs16830979, rs2664156, rs3753391, rs55820761, rs2274611, rs16830219, rs12270356, rs10883962, rs11264511, rs2282436, rs738791

## Full text

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## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC12788879/full.md

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Source: https://tomesphere.com/paper/PMC12788879