# Pilot Proteomic Analysis of Urinary Extracellular Vesicles Supports the “Toxic Urine Hypothesis” as a Vicious Cycle in Refractory IC/BPS Pathogenesis

**Authors:** Man-Jung Hung, Evelyn Yang, Tsung-Ho Ying, Peng-Ju Chien, Ying-Ting Huang, Wen-Wei Chang

PMC · DOI: 10.3390/ijms27010130 · International Journal of Molecular Sciences · 2025-12-22

## TL;DR

This study explores how urine from patients with bladder pain syndrome may contribute to chronic inflammation and suggests new treatment approaches.

## Contribution

The study provides proteomic evidence supporting the 'Toxic Urine Hypothesis' in refractory IC/BPS patients.

## Key findings

- IC/BPS patient EVs showed 31 upregulated and 19 downregulated proteins compared to controls.
- Patient EVs induced higher NF-κB activation in bladder epithelial cells.
- Findings suggest chronic epithelial stress persists despite suppressed acute inflammation.

## Abstract

Despite treatments such as pentosan polysulfate, hyaluronic acid, botulinum toxin A, and platelet-rich plasma, many interstitial cystitis/bladder pain syndrome (IC/BPS) patients experience persistent symptoms. Urinary extracellular vesicles (uEVs) carry molecular cargo reflecting disease pathophysiology, yet their proteomic profiles in treated IC/BPS remain unexplored. This pilot study examined uEV proteomics in refractory IC/BPS cases to test the “Toxic Urine Hypothesis”—a vicious cycle, whereby urothelial dysfunction enables EV-mediated toxin penetration, triggering inflammation that further impairs the bladder barrier. Urinary EVs were isolated from six female IC/BPS patients on active treatments and four healthy female controls. Mass spectrometry-based proteomics identified differential protein expressions, followed by pathway enrichment analysis and functional validation using NF-κB reporter assays in HEK293T cells and Western blot in primary human bladder epithelial cells. IC/BPS EVs exhibited 31 upregulated proteins (including HPGD, KRT8, HSPA4, 14-3-3 family members) and 19 downregulated proteins (including neutrophil granule proteins MPO and ELANE), indicating suppressed acute neutrophil inflammation but enriched homeostatic, metabolic, and regenerative pathways. Patient EVs induced significantly higher NF-κB activation than in the controls, with upregulated 14-3-3ζ and phosphorylated NF-κB p65 in bladder epithelial cells. These findings support the “Toxic Urine Hypothesis”, revealing persistent NF-κB-mediated chronic epithelial stress despite suppressed acute inflammation in treated IC/BPS patients, suggesting that therapies targeting inflammation and regeneration may help break this vicious cycle.

## Linked entities

- **Genes:** HPGD (15-hydroxyprostaglandin dehydrogenase) [NCBI Gene 3248], KRT8 (keratin 8) [NCBI Gene 3856], HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308], YWHAQ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta) [NCBI Gene 10971], MPO (myeloperoxidase) [NCBI Gene 4353], ELANE (elastase, neutrophil expressed) [NCBI Gene 1991], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970]
- **Proteins:** Ywhaz (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta)
- **Diseases:** interstitial cystitis/bladder pain syndrome (MONDO:0018301), IC/BPS (MONDO:0018301)

## Full-text entities

- **Genes:** ELANE (elastase, neutrophil expressed) [NCBI Gene 1991] {aka ELA2, GE, HLE, HNE, NE, PMN-E}, YWHAZ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta) [NCBI Gene 7534] {aka 14-3-3-zeta, HEL-S-3, HEL-S-93, HEL4, KCIP-1, POPCHAS}, MPO (myeloperoxidase) [NCBI Gene 4353], KRT8 (keratin 8) [NCBI Gene 3856] {aka CARD2, CK-8, CK8, CYK8, K2C8, K8}, YWHAQ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta) [NCBI Gene 10971] {aka 14-3-3, 1C5, HS1}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, HPGD (15-hydroxyprostaglandin dehydrogenase) [NCBI Gene 3248] {aka 15-PGDH, PGDH, PGDH1, PHOAR1, SDR36C1}
- **Diseases:** urothelial dysfunction (MESH:D014522), inflammation (MESH:D007249), IC/BPS (MESH:D018856)
- **Chemicals:** hyaluronic acid (MESH:D006820), pentosan polysulfate (MESH:D010426)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12786074/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12786074/full.md

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Source: https://tomesphere.com/paper/PMC12786074