# Quantitative ctDNA Profiling of RAS Mutations as a Prognostic Biomarker in Metastatic Colorectal Cancer

**Authors:** Benoist Chibaudel, Elisabeth Carola, Hamid Mekranter, Perrine Goyer, Arnaud Saget, Olivier Oberlin, Hélène Marijon, Hubert Richa, Ida Iurisci, Honorine Gervais, Nathalie Perez-Staub, Linda Dainese, Pascal Pujol, Alain Toledano, Jean-Baptiste Bachet, Aimery de Gramont

PMC · DOI: 10.3390/ijms27010008 · International Journal of Molecular Sciences · 2025-12-19

## TL;DR

This study shows that measuring RAS mutation levels in blood DNA can predict survival in metastatic colorectal cancer patients.

## Contribution

The study identifies a 5% RAS variant allele frequency threshold as a novel prognostic biomarker for metastatic colorectal cancer.

## Key findings

- A RAS VAF threshold of 5% best predicted overall survival in metastatic colorectal cancer patients.
- High RAS VAF was linked to worse survival and more aggressive tumor features.
- Quantitative ctDNA profiling improves risk stratification and treatment decisions.

## Abstract

Circulating tumor DNA (ctDNA) analysis offers a non-invasive approach to molecular profiling. While RAS mutations are well-established predictive biomarkers in metastatic colorectal cancer (mCRC), the prognostic value of their variant allele frequency (VAF) remains unclear. We retrospectively analyzed individual patient data with mCRC who underwent ctDNA testing using the FoundationOne® Liquid CDx assay. The primary objective was to determine the optimal RAS VAF cutoff for overall survival (OS) prognostication. Between November 2020 and July 2024, 282 patients were enrolled. Among 265 eligible patients, 134 (50.6%) were ctRAS mutant, 25 (9.4%) ctBRAF
V600E mutant, and 106 (40.0%) were ctRAS/BRAF wild-type. A RAS VAF threshold of 5% yielded the highest prognostic discrimination for OS (HR = 2.41; 95% CI 1.65–3.55; p < 0.0001; C-index = 0.601). ctRAS-high mutant tumors (VAF ≥ 5%) were associated with synchronous metastatic disease, multiple metastatic sites, higher blood tumor mutational burden, and elevated tumor fraction. ctRAS-low mutant tumors (VAF < 5%) were more frequently metachronous, presented with a single metastatic site, and showed liver involvement. High RAS VAF in ctDNA is a strong and independent prognostic marker for OS in mCRC. Quantitative ctDNA profiling may enhance risk stratification and guide personalized management strategies.

## Linked entities

- **Genes:** ras (resistance to audiogenic seizures) [NCBI Gene 19412], BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673]

## Full-text entities

- **Genes:** BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}
- **Diseases:** tumor (MESH:D009369), Colorectal Cancer (MESH:D015179)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** V600E

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12785939/full.md

## References

25 references — full list in the complete paper: https://tomesphere.com/paper/PMC12785939/full.md

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Source: https://tomesphere.com/paper/PMC12785939