# Network Pharmacology and Molecular Docking Identify Medicarpin as a Potent CASP3 and ESR1 Binder Driving Apoptotic and Hormone-Dependent Anticancer Activity

**Authors:** Yanisa Rattanapan, Sirinya Sitthirak, Aman Tedasen, Thitinat Duangchan, Hasaya Dokduang, Nawanwat C. Pattaranggoon, Krittamate Saisuwan, Takol Chareonsirisuthigul

PMC · DOI: 10.3390/ijms27010174 · International Journal of Molecular Sciences · 2025-12-23

## TL;DR

Medicarpin, a natural compound, may fight ovarian cancer by targeting key proteins involved in cell death and hormone signaling.

## Contribution

This study identifies medicarpin as a multitarget anticancer agent through network pharmacology and molecular docking.

## Key findings

- Medicarpin binds strongly to CASP3 and ESR1, key proteins in apoptosis and hormone signaling.
- The compound interacts with 10 hub genes linked to kinase and apoptotic pathways in ovarian cancer.
- Network analysis suggests medicarpin modulates PI3K–Akt/mTOR and prolactin signaling pathways.

## Abstract

Ovarian cancer (OC) remains one of the most lethal gynecologic malignancies due to late diagnosis, rapid progression, and frequent chemoresistance. Despite advances in targeted therapy, durable responses are uncommon, underscoring the need for novel multitarget agents capable of modulating key oncogenic networks. Medicarpin, a natural pterocarpan phytoalexin, exhibits diverse pharmacological activities; however, its molecular mechanisms in OC are poorly defined. This study employed an integrative in silico framework combining network pharmacology, pathway enrichment, molecular docking, and survival analysis to elucidate medicarpin’s therapeutic landscape in OC. A total of 107 overlapping targets were identified, resulting in a dense protein–protein interaction network enriched in kinase-mediated and apoptotic signaling pathways. Ten hub genes were emphasized: CASP3, ESR1, mTOR, PIK3CA, CCND1, GSK3B, CDK4, PARP1, CHEK1, and ABL1. Gene Ontology and KEGG analyses demonstrated substantial enrichment in the PI3K–Akt/mTOR and prolactin signaling pathways. Docking revealed the stable binding of medicarpin to CASP3 (−6.13 kcal/mol) and ESR1 (−7.68 kcal/mol), supporting its dual regulation of hormonal and apoptotic processes. Although CASP3 and ESR1 expression alone lacked prognostic significance, their network interplay suggests synergistic relevance. Medicarpin exhibits multitarget anticancer potential in OC by modulating kinase-driven and hormone-dependent pathways, warranting further experimental validation.

## Linked entities

- **Genes:** CASP3 (caspase 3) [NCBI Gene 836], ESR1 (estrogen receptor 1) [NCBI Gene 2099], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], CCND1 (cyclin D1) [NCBI Gene 595], GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019], PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142], CHEK1 (checkpoint kinase 1) [NCBI Gene 1111], ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25]
- **Proteins:** CASP3 (caspase 3), ESR1 (estrogen receptor 1), MTOR (mechanistic target of rapamycin kinase), PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), CCND1 (cyclin D1), GSK3B (glycogen synthase kinase 3 beta), CDK4 (cyclin dependent kinase 4), PARP1 (poly(ADP-ribose) polymerase 1), CHEK1 (checkpoint kinase 1), ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase)
- **Chemicals:** Medicarpin (PubChem CID 73067)
- **Diseases:** ovarian cancer (MONDO:0005140)

## Full-text entities

- **Genes:** ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, PRL (prolactin) [NCBI Gene 5617] {aka GHA1, pPRL}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019] {aka CMM3, MCPH31, PSK-J3}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}
- **Diseases:** gynecologic malignancies (MESH:D005833), OC (MESH:D010051)
- **Chemicals:** Medicarpin (MESH:C047353), pterocarpan phytoalexin (-)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12785696/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12785696/full.md

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Source: https://tomesphere.com/paper/PMC12785696