# YBX1 orchestrates LDHA-mediated metabolic reprogramming and NF-κB activation to drive clear cell renal cell carcinoma progression

**Authors:** Yihan Dong, Aixin Qiu, Shuang Liu, Yuejing Pan, Tianyu Lin, Rui Wang, Ruibing Chen, Huamao Jiang, Yang Yu, Yong Wang, Dan Yue

PMC · DOI: 10.1038/s41419-025-08261-0 · Cell Death & Disease · 2026-01-08

## TL;DR

This study shows how YBX1 promotes kidney cancer by altering metabolism and activating a key signaling pathway.

## Contribution

The novel discovery is the YBX1-LDHA-NF-κB axis as a driver of clear cell renal cell carcinoma progression.

## Key findings

- YBX1 promotes glycolysis and malignant progression in RCC by interacting with LDHA.
- YBX1 regulates LDHA transcription and activates the NF-κB signaling pathway.
- Inhibiting LDHA rescues YBX1-induced NF-κB activation and reduces RCC cell proliferation.

## Abstract

Renal cell carcinoma (RCC) is sometimes referred to as a “metabolic disease”, as nearly all types of RCC are associated with the reprogramming of glucose and lipid metabolism. Y-box binding protein 1 (YBX1) plays a crucial regulatory role in the development and progression of various cancers. In the early stages of our study, we analyzed the YBX1 binding proteins in 786-O cells using IP-MS and found that YBX1 is involved in the glycolysis process of RCC. Subsequent experiments showed that YBX1 is an oncogene that is significantly upregulated in RCC. Functionally, YBX1 promotes glycolysis in RCC, and both in vitro and in vivo experiments demonstrate that YBX1 contributes to the malignant progression of RCC. The correlation between YBX1 and Lactate Dehydrogenase A (LDHA) expression was predicted by bioinformatics and further explored in clinical RCC tissues. Mechanistically, YBX1 interacts with LDHA and co-localizes in the cytoplasm. CUT&Tag and functional experiments further revealed that YBX1 regulates LDHA through transcription. Additionally, YBX1 and LDHA activate the nuclear factor kappa-B (NF-κB) signaling pathway. Silencing the LDHA gene or using an LDHA inhibitor rescued the YBX1-mediated activation of the NF-κB signaling pathway and inhibited lactic acid production and RCC cell proliferation. In conclusion, these findings provide new insights into the oncogenic role of YBX1 in glycolysis and suggest that the YBX1-LDHA-NF-κB axis may represent a promising therapeutic target of RCC.

## Linked entities

- **Genes:** YBX1 (Y-box binding protein 1) [NCBI Gene 4904], LDHA (lactate dehydrogenase A) [NCBI Gene 3939], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790]
- **Proteins:** YBX1 (Y-box binding protein 1), LDHA (lactate dehydrogenase A), NFKB1 (nuclear factor kappa B subunit 1)
- **Diseases:** renal cell carcinoma (MONDO:0005086), clear cell renal cell carcinoma (MONDO:0005005)

## Full-text entities

- **Genes:** LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}
- **Diseases:** cancers (MESH:D009369), metabolic disease (MESH:D008659), RCC (MESH:D002292)
- **Chemicals:** lactic acid (MESH:D019344), lipid (MESH:D008055), glucose (MESH:D005947)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12783105/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12783105/full.md

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Source: https://tomesphere.com/paper/PMC12783105