# Microbial profile along the maternal-infant axis: Early characterization and relationships in breastfeeding women and their newborns in a Colombian population

**Authors:** Diana Carolina Londoño-Sierra, Claudia Jaramillo-Mazo, Shadia Blel, Victoria Mesa, Sandra Lucia Restrepo-Mesa, Julián Paul Martínez Galán, Laura Sierra-Zapata

PMC · DOI: 10.1371/journal.pone.0340091 · PLOS One · 2026-01-08

## TL;DR

This study explores the microbial communities in mothers and their newborns in Colombia, revealing distinct profiles and shared microbes that could impact early-life health.

## Contribution

The first comprehensive characterization of the maternal-infant microbial axis in a Colombian population.

## Key findings

- Maternal gut microbiota was dominated by Subdoligranulum spp., Akkermansia spp., and Bacteroides spp.
- Human milk microbiota was primarily composed of Streptococcus spp. and Staphylococcus spp.
- Infant gut microbiota was mainly Escherichia-Shigella spp. and Bifidobacterium spp., with 644 shared ASVs across all three microbiomes.

## Abstract

To characterize the maternal-infant microbiota and examine microbial relationships among the maternal gut, human milk, and infant gut microbiomes in a cohort of Colombian mother-infant pairs at a single time point within the first three months postpartum.

A cross-sectional study was conducted with 30 mother-infant pairs. A total of 90 samples of human milk, maternal feces, and infant feces from healthy, exclusively breastfeeding pairs were analyzed to assess bacterial composition and diversity using microbiota analysis performed with 16S ribosomal RNA (rRNA) sequencing on the Illumina platform.

The maternal gut microbiota was dominated by Subdoligranulum spp., Akkermansia spp., Christensenellaceae R-7 group, and Bacteroides spp., while the human milk microbiota was dominated by Streptococcus spp. and Staphylococcus spp. In contrast, the infant gut microbiota was primarily made up of Escherichia-Shigella spp. and Bifidobacterium spp. A total of 644 ASVs were shared among the maternal gut microbiota, human milk, and infant gut microbiota.

This study offers the first comprehensive characterization of the maternal-infant microbial axis in a specific Colombian population, highlighting distinct microbial profiles in healthy lactating mothers, human milk, and their infants, and indicating potential microbial interactions that could be important for early-life colonization.These findings should be considered in clinical and nutritional care strategies for lactating women, as they may provide an opportunity to promote health in the mother-infant dyad. Future studies will need to investigate factors, including nutritional factors, which may influence the microbiota along the maternal-infant axis.

## Full-text entities

- **Species:** Bacteroides sp. (species) [taxon 29523], Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Shigella (genus) [taxon 620]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12782371/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12782371/full.md

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Source: https://tomesphere.com/paper/PMC12782371