# Targeting glioblastoma with HDAC inhibitors: insights into hydroxamic acid-based therapeutic strategies

**Authors:** Padmini Pai, Ipshita Das, Yashaswini Reddy, Babu Santhi Venkidesh, Poonam Bhandari, Manjunath Madalageri, Veeresh Sadashivanavar, Karkala Sreedhara Ranganath Pai, Pallavi Rao, Srinivas Oruganti, Manasa Gangadhar Shetty, Kapaettu Satyamoorthy, Babitha Kampa Sundara

PMC · DOI: 10.1186/s40478-025-02194-7 · 2025-12-02

## TL;DR

This study explores a new hydroxamic acid compound that shows promise in treating glioblastoma by targeting epigenetic regulators and inducing cancer cell death.

## Contribution

A novel hydroxamic acid-based HDAC inhibitor, compound 3B, is introduced with demonstrated antitumor efficacy in glioblastoma models.

## Key findings

- Compound 3B inhibits glioma cell proliferation and induces G2/M phase cell cycle arrest.
- It increases apoptosis and reduces colony formation in glioma cells.
- In vivo models show strong antitumor activity of compound 3B.

## Abstract

Epigenetic modifications play crucial roles in glioblastoma growth and aggressiveness, with key regulators including histone deacetylases (HDACs), histone acetyltransferases (HATs), and methyltransferases. Targeting these epigenetic alterations has emerged as a promising therapeutic strategy, utilizing DNA methyltransferase (DNMT) inhibitors, HDAC inhibitors (HDACis), and miRNA-based therapies. HDACis, whose effect on p53, p21, Bax, and Bcl-2, have gained significant interest because of their ability to restore the expression of tumor suppressor genes, thereby inducing apoptosis and overcoming therapeutic resistance. Our study demonstrated that a novel hydroxamic acid analogue, compound 3B, effectively inhibited glioma cell (C6) proliferation and exhibited potent anticancer activity. Compound 3B induced G2/M phase cell cycle arrest, increased apoptotic cell populations, and significantly reduced colony formating efficiency. Confocal imaging revealed nuclear condensation and elevated reactive oxygen species (ROS) levels, indicating oxidative stress. Western blot analysis confirmed that HDAC inhibition increased AcH3K9 protein levels. Further, studies in in vivo xenograft model and allograft C6 Wistar rat model revealed strong antitumour activity, suggesting that compound 3B is a promising therapeutic candidate for glioblastoma treatment.

The online version contains supplementary material available at 10.1186/s40478-025-02194-7.

## Linked entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157], CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596]
- **Proteins:** DNMT1 (DNA methyltransferase 1)
- **Chemicals:** compound 3B (PubChem CID 11984561)
- **Diseases:** glioblastoma (MONDO:0018177)

## Full-text entities

- **Genes:** p53-ps (Wistar clone pR53P1 p53 pseudogene) [NCBI Gene 301300], Bcl2 (BCL2, apoptosis regulator) [NCBI Gene 24224] {aka Bcl-2}, Bax (BCL2 associated X, apoptosis regulator) [NCBI Gene 24887], Kras (KRAS proto-oncogene, GTPase) [NCBI Gene 24525] {aka K-ras, Kras2, c-Ki-ras, p21}
- **Diseases:** tumor (MESH:D009369), glioblastoma (MESH:D005909), glioma (MESH:D005910)
- **Chemicals:** ROS (MESH:D017382), hydroxamic acid (MESH:D006877), 3B (-)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116]
- **Cell lines:** C6 — Rattus norvegicus (Rat), Rat malignant glioma, Cancer cell line (CVCL_0194)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12776992/full.md

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Source: https://tomesphere.com/paper/PMC12776992