# Hydrophobic complementarity-determining region 3 (CDR3) sequences elucidate the cardiotoxic effects of immune checkpoint inhibitors

**Authors:** Shoiab Bukhari, Rajat Mohindra, Matthieu Paiola, Carly Tymm, Robert Winchester, Aditi Guha, Laura Tang, Sanjay Bansal, Brian S. Henick, G. Scott Chandler, Adam Mor

PMC · DOI: 10.21203/rs.3.rs-8320867/v1 · 2025-12-16

## TL;DR

This study explores how immune checkpoint inhibitors cause heart damage by analyzing T cells and TCR sequences in patients who experienced cardiotoxicity.

## Contribution

The study identifies shorter, hydrophobic TCR CDR3 sequences as a novel mechanism linking T cell activation to irAE-related myocarditis.

## Key findings

- Patients with cardiotoxicity had increased CD4+ FOXP3+ and CD8+ PRF1+ T cells at disease onset.
- Effector CD8 T cells were found in heart tissue and pericardial fluid, indicating their role in myocarditis.
- TCR CDR3 sequences in myocarditis patients were shorter and had more hydrophobic residues.

## Abstract

Immune checkpoint inhibitors (ICIs) have significantly changed cancer treatment, demonstrating strong efficacy across multiple cancers. However, their use also carries the risk of serious immune-related side effects (irAEs), especially cardiotoxicity. To understand how these adverse effects occur, we studied peripheral blood mononuclear cells and T cells taken from the heart tissue of cancer patients who experienced cardiotoxicity during ICI therapy. Using spectral flow cytometry, single-cell RNA sequencing, and T cell receptor (TCR) sequencing, we found key differences in the immune profiles of affected patients. Those with cardiotoxicity had a noticeable increase in circulating CD4 + FOXP3 + and CD8 + PRF1 + T cells at disease onset. Our results also show that effector CD8 T cells are present in the heart tissue and pericardial fluid of patients with myocarditis, highlighting their role in starting the disease. TCR sequencing revealed expansions of CD8 GZMK + GZMA + and CD8 PRF1 + GZMA + T cells in myocarditis patients, along with increased activation markers CD69 and KLRG1, supporting the idea that specific cytotoxic CD8 T cell groups promote inflammation. Notably, we also found that T cells from patients with irAE myocarditis have shorter TCR CDR3 sequences, with a higher proportion of hydrophobic residues. This discovery suggests a new mechanism for TCR involvement in irAE myocarditis, focusing on T cell activation through the TCR’s functional promiscuity, which relies more on TCR-MHC interactions than on specific peptide features. Overall, this research provides a foundation for new strategies targeting TCR physical properties to reduce risks and develop more precise therapies for vulnerable patients.

## Linked entities

- **Genes:** FOXP3 (forkhead box P3) [NCBI Gene 50943], PRF1 (perforin 1) [NCBI Gene 5551], GZMK (granzyme K) [NCBI Gene 3003], GZMA (granzyme A) [NCBI Gene 3001], CD69 (CD69 molecule) [NCBI Gene 969], KLRG1 (killer cell lectin like receptor G1) [NCBI Gene 10219]
- **Diseases:** myocarditis (MONDO:0004496)

## Full-text entities

- **Genes:** CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, PRF1 (perforin 1) [NCBI Gene 5551] {aka HPLH2, P1, PFP}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, KLRG1 (killer cell lectin like receptor G1) [NCBI Gene 10219] {aka 2F1, CLEC15A, MAFA, MAFA-2F1, MAFA-L, MAFA-LIKE}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}
- **Diseases:** myocarditis (MESH:D009205), cardiotoxic (MESH:D066126), cancer (MESH:D009369), inflammation (MESH:D007249)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12776525/full.md

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Source: https://tomesphere.com/paper/PMC12776525