# PD-1 regulates CD4+ T cell-mediated CD8+ T cell responses in the brain to balance viral control and neuroinflammation

**Authors:** Arrienne B. Butic, Elia Afanasiev, Samantha A. Spencer, Mofida Abdelmageed, Anirban Paul, Kalynn M. Alexander, Katelyn N. Ayers, Todd D. Schell, Matthew D. Lauver, Ge Jin, Samantha M. Borys, Laurent Brossay, Jo Anne A. Stratton, Vonn Walter, Aron E. Lukacher

PMC · DOI: 10.21203/rs.3.rs-8215051/v1 · 2025-12-12

## TL;DR

This study shows how PD-1 in CD4+ T cells helps control brain virus levels while preventing excessive inflammation during a viral infection.

## Contribution

The study reveals that CD4+ T cell-intrinsic PD-1 signaling balances antiviral defense and neuroinflammation during polyomavirus infection.

## Key findings

- PD-1 loss increases brain-infiltrating CD4+ and CD8+ T cells and virus-specific CD8+ T cell function.
- Deleting PD-1 in CD4+ T cells alone reproduces the effects of global PD-1 loss.
- PD-1-deficient CD8+ T cells show increased effector function and upregulated proliferation transcripts.

## Abstract

Programmed cell death protein 1 (PD-1) is expressed by T cells during progressive multifocal leukoencephalopathy (PML), a life-threatening brain disease caused by the human-only JC polyomavirus. Why PD-1 blockade finds variable success in PML patients is unclear. Brain CD4+ and CD8+ T cells are PD-1high during mouse polyomavirus (MuPyV) encephalitis. Here, we show that PD-1 loss during MuPyV infection acts in a brain-autonomous manner to increase the magnitude of brain-infiltrating CD4+ and CD8+ T cells and the function of virus-specific CD8+ T cells; in concert, brain virus levels decline and neuroinflammation increases. Deletion of PD-1 in CD4+ T cells, but not CD8+ T cells, recapitulates effects of global PD-1 loss. Single-cell RNA sequencing shows that PD-1-deficient CD8+ T cells cluster as effectors while transcripts associated with proliferation and function are upregulated with loss of PD-1. Thus, CD4+ T cell-intrinsic PD-1 signaling balances antiviral defense against neural injury during polyomavirus CNS infection.

## Linked entities

- **Genes:** PDCD1 (programmed cell death 1) [NCBI Gene 5133]
- **Proteins:** CD4 (CD4 molecule), CD8A (CD8 subunit alpha)
- **Diseases:** progressive multifocal leukoencephalopathy (MONDO:0016318), brain disease (MONDO:0005560), encephalitis (MONDO:0019956)

## Full-text entities

- **Genes:** PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}
- **Diseases:** PML (MESH:D007968), brain disease (MESH:D001927), infection (MESH:D007239), polyomavirus CNS infection (MESH:D027601), encephalitis (MESH:D004660), neural injury (MESH:D014947), neuroinflammation (MESH:D000090862)
- **Species:** JC polyomavirus (no rank) [taxon 10632], Alphapolyomavirus muris (species) [taxon 1891730], Homo sapiens (human, species) [taxon 9606]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12776484/full.md

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Source: https://tomesphere.com/paper/PMC12776484