# The genome sequence of the Grey Tortrix moth, Cnephasia stephensiana (Doubleday, 1850) (Lepidoptera: Tortricidae)

**Authors:** Liam M. Crowley, Xueyan Li, Panagiotis Ioannidis

PMC · DOI: 10.12688/wellcomeopenres.24977.1 · 2025-10-06

## TL;DR

This paper presents the genome sequence of the Grey Tortrix moth, including two haplotypes and a mitochondrial genome, as part of a larger project to sequence species in Britain and Ireland.

## Contribution

The paper provides a high-quality reference genome for Cnephasia stephensiana, including chromosomal pseudomolecules and a mitochondrial assembly.

## Key findings

- The genome assembly includes two haplotypes with lengths of 465.14 and 465.69 megabases.
- Haplotype 1 is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome.
- The mitochondrial genome is 16.63 kilobases long and has been assembled.

## Abstract

We present a genome assembly from an individual male
Cnephasia stephensiana (Grey Tortrix; Arthropoda; Insecta; Lepidoptera; Tortricidae). The assembly contains two haplotypes with total lengths of 465.14 megabases and 465.69 megabases. Most of haplotype 1 (99.5%) is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.63 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

## Linked entities

- **Species:** Cnephasia stephensiana (taxon 1116892), Arthropoda (taxon 6656), Insecta (taxon 50557), Lepidoptera (taxon 7088), Tortricidae (taxon 7139)

## Full-text entities

- **Species:** Cnephasia stephensiana (species) [taxon 1116892]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12775664/full.md

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Source: https://tomesphere.com/paper/PMC12775664