# Brain transcriptome-wide association studies in diverse ancestral populations reveal genes implicated in an anxiety-related phenotype

**Authors:** Maya Z Sharma, Heather E Wheeler

PMC · DOI: 10.1093/g3journal/jkaf277 · G3: Genes | Genomes | Genetics · 2025-11-17

## TL;DR

This study identifies genes linked to anxiety by analyzing genetic data from diverse populations, revealing shared genetic factors with other mental health conditions.

## Contribution

The study identifies novel genes and loci associated with anxiety using diverse ancestral populations and highlights shared genetic architecture with other neuropsychiatric traits.

## Key findings

- 67 independent significant loci were identified in a combined meta-analysis of six ancestral populations.
- CADM2 was identified in the META-TWAS and SMAGP in the AFR-TWAS as genes associated with anxiety.
- The identified genes are enriched for variants linked to autism, neuroticism, and schizophrenia.

## Abstract

Anxiety is the most prevalent form of mental illness in the United States. We aimed to identify genetic variation underlying anxiety in diverse ancestral populations through integrating genomic and brain transcriptomic data. We analyzed genome-wide association study (GWAS) summary statistics, using the “Worrier/Anxious Feelings” phenotype from Pan-UK Biobank. We identified 67 independent significant loci in the combined meta-analysis of six ancestral populations (META-GWAS) and 1 locus in the African (AFR) GWAS (P < 5.0 × 10−8). We performed transcriptome-wide association studies (TWAS) and identified 683 significantly associated genes in the META-TWAS, and 1 gene in the AFR-TWAS (P < 3.85 × 10−6). Namely, we identified CADM2 in the META-TWAS and its predicted paralog SMAGP in the AFR-TWAS. The genes identified in TWAS were enriched for variants associated with autism, neuroticism, and schizophrenia, highlighting shared genetic architecture among neuropsychiatric traits. In this study, we present these loci and genes as potential targets for future research on anxiety-related phenotypes.

## Linked entities

- **Genes:** CADM2 (cell adhesion molecule 2) [NCBI Gene 253559], SMAGP (small cell adhesion glycoprotein) [NCBI Gene 57228]
- **Diseases:** anxiety (MONDO:0005618), autism (MONDO:0005260), schizophrenia (MONDO:0005090)

## Full-text entities

- **Genes:** CADM2 (cell adhesion molecule 2) [NCBI Gene 253559] {aka IGSF4D, NECL3, Necl-3, SynCAM 2, SynCAM-2, synCAM2}, SMAGP (small cell adhesion glycoprotein) [NCBI Gene 57228] {aka hSMAGP}
- **Diseases:** Anxiety (MESH:D001007), mental illness (MESH:D001523), schizophrenia (MESH:D012559), autism (MESH:D001321), neuropsychiatric traits (MESH:C000631768)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12774604/full.md

## References

63 references — full list in the complete paper: https://tomesphere.com/paper/PMC12774604/full.md

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Source: https://tomesphere.com/paper/PMC12774604