# Gut commensal Bifidobacterium longum confers resistance to Salmonella Typhimurium and Shigella flexneri in a Caenorhabditis elegans model

**Authors:** Phurt Harnvoravongchai, Samara Paula Mattiello, Achuthan Amabat, Jusail C. P., Syed M. Faisal, Radhey S. Kaushik, Joy Scaria

PMC · DOI: 10.1128/spectrum.01842-25 · Microbiology Spectrum · 2025-12-05

## TL;DR

Bifidobacterium longum, a gut bacterium, protects against Salmonella and Shigella infections in a worm model, suggesting it could be a non-antibiotic treatment.

## Contribution

Identifies Bifidobacterium longum as a gut commensal that inhibits Salmonella and Shigella through distinct mechanisms in a C. elegans model.

## Key findings

- B. longum reduces pathogen burden and improves survival in C. elegans infected with Salmonella and Shigella.
- B. longum inhibits Salmonella via acidification and Shigella via protein or heat-stable metabolites.
- B. longum modulates host immune pathways like p38 MAPK and insulin/IGF-1 signaling.

## Abstract

Salmonellosis and shigellosis remain major global health concerns, with Salmonella Typhimurium and Shigella flexneri classified as high-priority antibiotic-resistant pathogens by the World Health Organization. The development of new antibiotics is slow and challenging, underscoring the need for alternative therapeutic strategies. One promising approach involves leveraging gut microbiota-derived bacteria that confer colonization resistance against enteric pathogens. In this study, we screened a human gut microbiota culture collection and identified Bifidobacterium longum as the most effective species in inhibiting S. Typhimurium and S. flexneri in vitro. To evaluate its protective potential in vivo, we utilized Caenorhabditis elegans as a model system. Our findings demonstrate that B. longum significantly reduced pathogen burden and enhanced host survival following infection. Mechanistic analysis revealed that B. longum inhibits S. Typhimurium primarily through acidification, while S. flexneri suppression appears to involve a protein-mediated or heat-stable metabolite-dependent mechanism. Additionally, B. longum modulated host immune pathways, downregulating genes associated with the p38 MAPK and insulin/IGF-1 signaling pathways. These results highlight the potential of B. longum as a non-antibiotic therapeutic for controlling Salmonella and Shigella infections. However, further validation in mammalian models is required to assess its clinical relevance.

Gut infections caused by Salmonella and Shigella are major global health threats. As an alternative to novel drug discovery, which is time-consuming and faces several challenges, this study explores the potential of gut bacteria to protect against these pathogens. We identified Bifidobacterium longum, a common gut microbe, which can significantly reduce infection by both Salmonella and Shigella in a lab setting and in a simple animal model. The bacterium functions by creating an environment that is hostile to pathogens and by modulating the host’s immune responses. These findings suggest that B. longum could be developed as a natural, non-antibiotic treatment to control or reduce these enteric pathogen infections. This approach opens the door to using probiotics as effective tools in the global fight against antibiotic resistance.

## Linked entities

- **Genes:** P38mapk (p38 map kinase) [NCBI Gene 692545]
- **Diseases:** Salmonellosis (MONDO:0000827), shigellosis (MONDO:0019345)
- **Species:** Bifidobacterium longum (taxon 216816), Shigella flexneri (taxon 623), Caenorhabditis elegans (taxon 6239)

## Full-text entities

- **Diseases:** Gut infections (MESH:D007239), enteric pathogen infections (MESH:D004751), Salmonellosis (MESH:D012480), Shigella infections (MESH:D004405)
- **Species:** Shigella (genus) [taxon 620], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Bifidobacterium longum (species) [taxon 216816], Caenorhabditis elegans (species) [taxon 6239], Homo sapiens (human, species) [taxon 9606], Shigella flexneri (species) [taxon 623]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12772369/full.md

## References

59 references — full list in the complete paper: https://tomesphere.com/paper/PMC12772369/full.md

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Source: https://tomesphere.com/paper/PMC12772369