# Single‐Cell RNA Sequencing of Thyroid Tissues Reveals Pathogenesis of Graves' Disease

**Authors:** Xiaoyi Zhou, Jia Cong, Rongguang Peng, Dichen Yang, Chenchen Dong, Jing Xie, Jiqi Yan, Jie Kuang, Fubin Li, Leng Siew Yeap, Xiaoyan Xie, Haolong Yin, Rulai Han, Liyun Shen, Yulin Zhou, Guang Ning, Shu Wang, Weiqing Wang, Lei Ye

PMC · DOI: 10.1002/advs.202508449 · Advanced Science · 2025-10-23

## TL;DR

This study uses single-cell RNA sequencing to uncover immune cell changes in thyroid tissues of Graves' disease patients, revealing new pathways in the disease's progression.

## Contribution

The study identifies an MHC-independent pathway involving γδ T cells and stressed thyroid follicular cells in Graves' disease pathogenesis.

## Key findings

- GD thyroid tissues show enrichment of IFN-γ-secreting CD4+ T cells, Tph cells, and CD11c+ B cells.
- Stressed thyroid follicular cells activate γδ T/NK cells, which recruit cDC1 cells.
- γδ T cells may link TFC stress to autoimmune activation in GD.

## Abstract

Graves' disease (GD) is an autoimmune disorder primarily targeting the thyroid tissue. While major histocompatibility complex (MHC)‐dependent B cell activation and thyroid‐stimulating hormone receptor (TSHR) autoantibody production are central to GD, the intrathyroidal immune landscape remains largely unexplored. Through single‐cell RNA sequencing (scRNA‐seq), this work constructed a comprehensive immune cell atlas, revealing dominant IFN‐γ‐secreting CD4+ T cells, expanded T peripheral helper (Tph) cells, CD11c+ atypical B cells, and CD8+ effector T cells. Notably, stress‐surveilling γδ T/NK cells are enriched in GD. Thyroid follicular cells (TFCs) in GD exhibited a stressed phenotype, and in vitro functional assays showed that they promote γδ T cell activation and proliferation. γδ T cells may recruit conventional type 1 dendritic cells (cDC1) via XCL1/XCL2, suggesting a potential link to adaptive immune reorganization. These findings suggest an additional MHC‐independent pathway linking TFC stress to autoimmune activation via γδ T cells in GD pathogenesis.

Using single‐cell RNA sequencing and TCR profiling, this study constructed an immune cell atlas in thyroid tissue of Graves’ disease (GD), revealing dominant IFN‐γ‐secreting CD4+ T cells, expanded Tph and CD11c+ B cells, and enriched T/NK cells. Notably, GD thyroid follicular cells (TFCs) activated γδ T cells, which recruited cDC1 cells, suggesting a mechanism linking TFC stress to autoimmune activation in GD pathogenesis.

## Linked entities

- **Proteins:** TSHR (thyroid stimulating hormone receptor), IFNG (interferon gamma), XCL1 (X-C motif chemokine ligand 1), XCL2 (X-C motif chemokine ligand 2)
- **Diseases:** Graves' disease (MONDO:0005364)

## Full-text entities

- **Genes:** XCL1 (X-C motif chemokine ligand 1) [NCBI Gene 6375] {aka ATAC, LPTN, LTN, SCM-1, SCM-1a, SCM1}, XCL2 (X-C motif chemokine ligand 2) [NCBI Gene 6846] {aka SCM-1b, SCM1B, SCYC2}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, TSHR (thyroid stimulating hormone receptor) [NCBI Gene 7253] {aka CHNG1, LGR3, hTSHR-I}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}
- **Diseases:** GD (MESH:D006111), autoimmune disorder (MESH:D001327)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12767108/full.md

## References

78 references — full list in the complete paper: https://tomesphere.com/paper/PMC12767108/full.md

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Source: https://tomesphere.com/paper/PMC12767108