# PHGDH at the crossroads: metabolic plasticity, metastatic paradoxes, and therapeutic reconnaissance in cancer

**Authors:** Liang Hao, Bai-Qiang Li, Shi-Yang Lu, Zhong-Cai An, Zheng-Yuan Yin, Zhen-Xian Du, Hua-Qin Wang

PMC · DOI: 10.1186/s12929-025-01205-y · Journal of Biomedical Science · 2026-01-05

## TL;DR

This paper reviews PHGDH, a key enzyme in cancer metabolism, highlighting its roles in tumor growth, regulation, and therapeutic challenges.

## Contribution

The paper proposes a precision roadmap integrating multi-omics and AI to address PHGDH's therapeutic paradox and metabolic plasticity.

## Key findings

- PHGDH regulates cancer metabolism through multiple layers including epigenetic and post-translational modifications.
- PHGDH's nuclear and mitochondrial functions contribute to oncogenic transcription and metastasis.
- PHGDH inhibition shows therapeutic synergy but faces resistance and neurotoxicity risks.

## Abstract

Phosphoglycerate dehydrogenase (PHGDH), the rate-limiting enzyme of the serine biosynthesis pathway (SSP), is a central metabolic hub and multifunctional oncoprotein that drives tumorigenesis through both canonical and non-canonical mechanisms. This review outlines the multi-level regulation of PHGDH, covering epigenetic remodeling (DNA hypomethylation, H3K4me3/H3K36me3 dynamics), transcriptional control (ATF4, MYC, EWS-FLI1), post-transcriptional fine-tuning (m6A/m5C modifications, RNA-binding proteins), and post-translational modifications (ubiquitination, methylation, phosphorylation). Together, these regulatory layers allow cancer cells to adapt metabolically to microenvironmental stress. Beyond its fundamental role in supplying nucleotides, maintaining redox homeostasis, and supporting one-carbon metabolism, PHGDH also performs moonlighting function. For example, its translocation to the nucleus inhibits PARP1 to sustain oncogenic transcription, while its presence in mitochondria helps remodel electron transport chains to promote metastasis. Critically, PHGDH exhibits a therapeutic paradox wherein its inhibition can synergize with chemotherapy, radiotherapy, and immunotherapy across diverse malignancies, yet tumors develop resistance via metabolic plasticity, or by selection of PHGDH-low metastatic clones. The clinical translation of PHGDH inhibitors is further challenged by inherent neurotoxicity risks, as neurons rely on de novo serine synthesis. To address these challenges, we propose a precision roadmap that integrates spatial multi-omics, AI-driven allosteric inhibitor design, dynamic biosensing (e.g., 18F-metabolite PET), and biomarker-stratified clinical trials. By reconciling the dual nature of PHGDH biology, we can transform this metabolic linchpin from a confounding paradox into a clinically actionable vulnerability.

## Linked entities

- **Genes:** PHGDH (phosphoglycerate dehydrogenase) [NCBI Gene 26227], ATF4 (activating transcription factor 4) [NCBI Gene 468], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609], EWSR1 (EWS RNA binding protein 1) [NCBI Gene 2130], PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142]
- **Proteins:** PHGDH (phosphoglycerate dehydrogenase), PARP1 (poly(ADP-ribose) polymerase 1)

## Full-text entities

- **Genes:** ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PHGDH (phosphoglycerate dehydrogenase) [NCBI Gene 26227] {aka 3-PGDH, 3PGDH, HEL-S-113, NLS, NLS1, PDG}, EWSR1 (EWS RNA binding protein 1) [NCBI Gene 2130] {aka EWS, EWS-FLI1}
- **Diseases:** metastasis (MESH:D009362), neurotoxicity (MESH:D020258), cancer (MESH:D009369), tumorigenesis (MESH:D063646)
- **Chemicals:** SSP (-), m6A (MESH:C005955), serine (MESH:D012694)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12766945/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12766945/full.md

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Source: https://tomesphere.com/paper/PMC12766945