# Autophagy and mitophagy at the synapse and beyond: implications for learning, memory and neurological disorders

**Authors:** Jiayi Lu, Damian N. Di Florio, Patricia Boya, Sandra Maday, Wolfdieter Springer, Charleen T. Chu

PMC · DOI: 10.1080/15548627.2025.2581217 · Autophagy · 2025-11-23

## TL;DR

This paper reviews how autophagy and mitophagy at synapses affect brain function and contribute to neurological disorders.

## Contribution

It emphasizes recent advances in autophagy and mitophagy research in neurons and their implications for neurodegenerative diseases.

## Key findings

- Autophagy at synapses is essential for pruning and plasticity under normal conditions.
- Disrupted mitophagy is linked to both genetic and environmental causes of neurodegenerative diseases.
- Autophagy-related pathways offer potential for diagnosis and treatment of neurological disorders.

## Abstract

The human brain is one of the most metabolically active tissues in the body, due in large part to the activity of trillions of synaptic connections. Under normal conditions, macroautophagy/autophagy at the synapse plays a crucial role in synaptic pruning and plasticity, which occurs physiologically in the absence of disease- or aging-related stressors. Disruption of autophagy has profound effects on neuron development, structure, function, and survival. Neurons are dependent upon maintaining high-quality mitochondria, and alterations in selective mitochondrial autophagy (mitophagy) are heavily implicated in both genetic and environmental etiologies of neurodegenerative diseases. The unique spatial and functional demands of neurons result in differences in the regulation of metabolic, autophagic, mitophagic and biosynthetic processes compared to other cell types. Here, we review recent advances in autophagy and mitophagy research with an emphasis on studies involving primary neurons in vitro and in vivo, glial cells, and iPSC-differentiated neurons. The synaptic functions of genes whose mutations implicate autophagic or mitophagic dysfunction in hereditary neurodegenerative and neurodevelopmental diseases are summarized. Finally, we discuss the diagnostic and therapeutic potentials of autophagy-related pathways.

Abbreviations: AD: Alzheimer disease; ALS: amyotrophic lateral sclerosis; APP: amyloid beta precursor protein; ASD: autism-spectrum disorder; BDNF: brain-derived neurotrophic factor; BPAN: β-propeller protein associated neurodegeneration; CR: caloric restriction; ΔN111: deleted N-terminal region 111 residues; DLG4/PSD95: discs large MAGUK scaffold protein 4; ER: endoplasmic reticulum; FTD: frontotemporal dementia; HD: Huntington disease; LIR: LC3-interacting region; LRRK2: leucine rich repeat kinase 2; LTD: long-term depression; LTP: long-term potentiation; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; OMM: outer mitochondrial membrane; PD: Parkinson spectrum diseases; PGRN: progranulin; PINK1: PTEN induced kinase 1; PRKA/PKA: protein kinase cAMP-activated; PtdIns3P: phosphatidylinositol-3-phosphate; p-S65-Ub: ubiquitin phosphorylated at serine 65; PTM: post-translational modification; TREM2: triggering receptor expressed on myeloid cells 2

## Linked entities

- **Genes:** LRRK2 (leucine rich repeat kinase 2) [NCBI Gene 120892], PINK1 (PTEN induced kinase 1) [NCBI Gene 65018], GRN (granulin precursor) [NCBI Gene 2896], TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209]
- **Diseases:** Alzheimer disease (MONDO:0004975), amyotrophic lateral sclerosis (MONDO:0004976), autism-spectrum disorder (MONDO:0005258), frontotemporal dementia (MONDO:0010857), Huntington disease (MONDO:0007739)

## Full-text entities

- **Genes:** LRRK2 (leucine rich repeat kinase 2) [NCBI Gene 120892] {aka AURA17, DARDARIN, PARK8, RIPK7, ROCO2}, DLG4 (discs large MAGUK scaffold protein 4) [NCBI Gene 1742] {aka MRD62, PSD95, SAP-90, SAP90}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, CD300C (CD300c molecule) [NCBI Gene 10871] {aka CLM-6, CMRF-35, CMRF-35A, CMRF35, CMRF35-A1, CMRF35A}, TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, GRN (granulin precursor) [NCBI Gene 2896] {aka CLN11, FTD2, GEP, GP88, PCDGF, PEPI}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}
- **Diseases:** amyotrophic lateral sclerosis (MESH:D000690), HD (MESH:D006816), ASD (MESH:D001321), neurodegenerative and neurodevelopmental diseases (MESH:D019636), FTD (MESH:D057180), PD (MESH:D010300), long-term depression (MESH:D000088562), AD (MESH:D000544), ALS (MESH:D008113), autism-spectrum disorder (MESH:D000067877), neurological disorders (MESH:D009461)
- **Chemicals:** PtdIns3P (MESH:C055525), S65 (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12758295/full.md

## References

547 references — full list in the complete paper: https://tomesphere.com/paper/PMC12758295/full.md

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Source: https://tomesphere.com/paper/PMC12758295