# Acoustically seeded fabrication of a DNA tesseract into a conductive wire

**Authors:** Simon Chi-Chin Shiu, Marcello DeLuca, Wai Hin Chui, Pingping Zhang, Xiaoyong Mo, Ryan Ho Ping Siu, Erqian Dong, Sichao Qu, Calvin Chun Long Cheung, Andrew B Kinghorn, William L Whitehouse, Jingyu Cui, Weisi He, Xue-Yan Wang, Jiahui Li, Areebah Gul Khan, Sophie H von Torklus, Tsz Fai Yu, Khuloud T Al-Jamal, Edmund C M Tse, Gaurav Arya, Nicholas Xuanlai Fang, Keda Zhou, Julian A Tanner

PMC · DOI: 10.1093/nar/gkaf1409 · Nucleic Acids Research · 2025-12-31

## TL;DR

Scientists built a DNA structure shaped like a tesseract and used sound waves to form conductive wires, opening new possibilities in bioelectronics.

## Contribution

A novel DNA tesseract structure with high stability and acoustic patterning potential is introduced.

## Key findings

- The DNA tesseract has a melting temperature of 84°C, higher than other unmodified DNA nanostructures.
- Acoustic shaping produced wires over 500 µm long with electrical conductivity.
- The structure is made from only 16 DNA oligonucleotides, enabling modular assembly.

## Abstract

Assembly of DNA nanostructures to sub-millimetre scales is expected to have significant potential for applications in materials science and medicine. One approach to control nanostructure growth is through using acoustic waves to create pressure nodes for clustering. Here, we report a facet-based underlying DNA nanostructure architecture with structural and stability characteristics ideal for acoustic patterning. The architecture comprises only 16 canonical DNA oligonucleotides which self-assemble to form a nested cube, inspired by the four-dimensional hypercube known as a “tesseract.” Cryogenic electron microscopy (Cryo-EM) and atomic force microscopy (AFM) analysis revealed a fully formed tesseract structure with exceptional stiffness and a melting temperature of 84°C, significantly higher than other unmodified DNA nanostructures. The DNA tesseract nanostructures could be acoustically shaped into wires spanning over 500 µm, observed after deposition onto an interdigitated electrode (IDE). The wires were shown to be electrically conductive, highlighting unique prospects for application. Simplified bottom-up assembly of a small number of oligonucleotides into a relatively complex and structurally stable DNA nanostructure with characteristics ideal for modular assembly holds promise for applications across bioelectronics and other fields.

Graphical Abstract

## Full-text entities

- **Genes:** CALCA (calcitonin related polypeptide alpha) [NCBI Gene 796] {aka CALC1, CGRP, CGRP-I, CGRP-alpha, CGRP1, CT}
- **Chemicals:** SYBR green (MESH:C098022), H2SO4 (MESH:C033158), water (MESH:D014867), KCl (MESH:D011189), titanium (MESH:D014025), NaCl (MESH:D012965), oligo (MESH:D009841), aluminum (MESH:D000535), polyacrylamide (MESH:C016679), Cy5 (MESH:C085321), disulfide (MESH:D004220), carbon (MESH:D002244), palladium (MESH:D010165), phosphate (MESH:D010710), TCEP (MESH:C080938), PDMS (MESH:C013830), magnesium acetate (MESH:C000656591), EDTA (MESH:D004492), ethanol (MESH:D000431), thymidine (MESH:D013936), LiNbO3 (MESH:C091692), citrate (MESH:D019343), phosphorus (MESH:D010758), ROX (-), Thiol (MESH:D013438), agarose (MESH:D012685), Au (MESH:D006046), NiCl2 (MESH:C022838), hydrocarbon (MESH:D006838), mica (MESH:C011934), nitrogen (MESH:D009584)
- **Mutations:** Q150T

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12754780/full.md

## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12754780/full.md

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Source: https://tomesphere.com/paper/PMC12754780