# Rv1899c, an HDAC1–ZBTB25-Interacting Protein of Mycobacterium tuberculosis, Promotes Stress Resistance and Immune Evasion in Infected Macrophages

**Authors:** Arjun M. Menon, Boinapalli Gopichand, Shwetha Susan Thomas, Kuniyil Abhinand, Bipin G. Nair, Geetha B. Kumar, Pradeesh Babu, KB Arun, Lekshmi K. Edison, Aravind Madhavan

PMC · DOI: 10.3390/ijms262210872 · International Journal of Molecular Sciences · 2025-11-09

## TL;DR

A protein from tuberculosis bacteria helps it survive stress and avoid immune attacks, making it a potential target for new treatments.

## Contribution

The study identifies Rv1899c as a novel mediator of stress resistance and immune evasion in Mycobacterium tuberculosis.

## Key findings

- Rv1899c enhances bacterial survival under acidic and oxidative stress in macrophages.
- Targeting Rv1899c with 3-aminobenzamide impairs bacterial survival and restores immune response.
- Computational modeling confirms Rv1899c's structure and identifies 3-AB as a strong ligand.

## Abstract

Rv1899c, a previously identified HDAC1–ZBTB25-interacting protein of Mycobacterium tuberculosis, plays a crucial role in bacterial adaptation and immune modulation. Recombinant M. smegmatis-expressing Rv1899c (MS_ Rv1899c) showed enhanced survival under acidic and oxidative stress compared to vector controls, along with improved early intracellular growth in THP1-derived macrophages. This was accompanied by reduced reactive oxygen species (ROS), diminished cytokines associated with inflammation and downregulation of autophagy proteins ATG5, Beclin, and LC3, which ultimately skewed the immune response, suppressing the pro-inflammatory M1 macrophage population. Targeting Rv1899c with 3-aminobenzamide (3-AB) impaired intracellular bacterial survival and restored IL-12B expression, while its combination with the HDAC inhibitor C1994 significantly enhanced bacterial clearance. Structural modelling confirmed the high stereochemical quality of the Rv1899c macrodomain, and computational studies identified 3-AB as the strongest ligand (−5.75 kcal/mol), stabilized through hydrogen bonding and hydrophobic interactions with key residues. Molecular dynamics simulations conducted for 200 ns demonstrated stable protein–ligand interactions with consistent parameters, while MM/GBSA analysis indicated favourable binding energy (ΔG_bind = −6.6 kcal/mol), largely influenced by van der Waals and electrostatic forces. Together, these findings highlight Rv1899c as a mediator of stress resistance and immune evasion and propose it as a potential therapeutic target against M. tuberculosis.

## Linked entities

- **Genes:** ATG5 (autophagy related 5) [NCBI Gene 9474], Atg6 (Autophagy-related 6) [NCBI Gene 42850], MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557], IL12B (interleukin 12B) [NCBI Gene 3593]
- **Proteins:** HDAC1 (histone deacetylase 1), ZBTB25 (zinc finger and BTB domain containing 25), ATG5 (autophagy related 5), Atg6 (Autophagy-related 6), MAP1LC3A (microtubule associated protein 1 light chain 3 alpha)
- **Chemicals:** 3-aminobenzamide (PubChem CID 1645), C1994 (PubChem CID 53384275)
- **Species:** Mycobacterium tuberculosis (taxon 1773)

## Full-text entities

- **Diseases:** inflammation (MESH:D007249)
- **Chemicals:** 3-AB (MESH:C025160), C1994 (-), ROS (MESH:D017382), hydrogen (MESH:D006859)
- **Species:** Mycolicibacterium smegmatis (species) [taxon 1772], Mycobacterium tuberculosis (species) [taxon 1773]
- **Cell lines:** THP1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006)

## Full text

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## Figures

14 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12652740/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12652740/full.md

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Source: https://tomesphere.com/paper/PMC12652740