# Molecular Genetics of Primary Congenital Hypothyroidism: Established and Emerging Contributors to Thyroid Dysgenesis

**Authors:** Niki Dermitzaki, Anastasios Serbis, Maria Baltogianni, Dimitra Gialamprinou, Lida Eleni Giaprou, Chrysoula Kosmeri, Vasileios Giapros

PMC · DOI: 10.3390/ijms262210849 · International Journal of Molecular Sciences · 2025-11-08

## TL;DR

This review discusses the genetic causes of thyroid dysgenesis, a major cause of congenital hypothyroidism, highlighting known and emerging genes involved.

## Contribution

The paper provides a comprehensive overview of both established and newly proposed genetic contributors to thyroid dysgenesis.

## Key findings

- Ten genes have been identified as involved in thyroid gland development and dysgenesis.
- Most cases of thyroid dysgenesis remain unexplained, suggesting a complex genetic basis.
- Epigenetic and environmental factors may also play a role in the condition's pathogenesis.

## Abstract

Congenital hypothyroidism (CH) is one of the most common endocrine disorders of childhood. The primary form of CH is attributable to thyroid dysgenesis (agenesis, hypoplasia, or ectopy) in 65–85% of cases, with the remaining cases being attributed to dyshormogenesis. Thyroid dysgenesis was considered a sporadic disease. However, the recent advantages of molecular techniques have significantly contributed to the understanding of the pathogenesis of the disease. The higher prevalence of congenital malformations and syndromes in patients with CH compared to the general population supports the genetic basis. This narrative review aims to provide an overview of the identified and potential genetic causes of thyroid dysgenesis. Mutations in ten genes involved in thyroid gland development during embryogenesis, TSHR, PAX8, NKX2-1, NKX2-5, FOXE1, JAG1, NTN1, GLIS3, CDC8A, and TUBB1, have been identified in cohorts of patients with thyroid dysgenesis. However, most cases remain unexplained. Novel candidate genes have been proposed. The extant evidence suggests that the pathogenesis of thyroid dysgenesis involves a spectrum of genetic etiologies, ranging from monogenic to multigenic, and that epigenetic or environmental factors may also contribute. As molecular techniques are continuously refined, future studies are expected to elucidate the complex genetic background of thyroid dysgenesis.

## Linked entities

- **Genes:** TSHR (thyroid stimulating hormone receptor) [NCBI Gene 7253], PAX8 (paired box 8) [NCBI Gene 7849], NKX2-1 (NK2 homeobox 1) [NCBI Gene 7080], NKX2-5 (NK2 homeobox 5) [NCBI Gene 1482], FOXE1 (forkhead box E1) [NCBI Gene 2304], JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182], NTN1 (netrin 1) [NCBI Gene 9423], GLIS3 (GLIS family zinc finger 3) [NCBI Gene 169792], TUBB1 (tubulin beta 1 class VI) [NCBI Gene 81027]
- **Diseases:** congenital hypothyroidism (MONDO:0018612)

## Full-text entities

- **Genes:** TUBB1 (tubulin beta 1 class VI) [NCBI Gene 81027] {aka MACTHC1}, TSHR (thyroid stimulating hormone receptor) [NCBI Gene 7253] {aka CHNG1, LGR3, hTSHR-I}, JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182] {aka AGS, AGS1, AHD, AWS, CD339, CMT2HH}, FOXE1 (forkhead box E1) [NCBI Gene 2304] {aka BAMLAZ, FKHL15, FOXE2, HFKH4, HFKL5, NMTC4}, GLIS3 (GLIS family zinc finger 3) [NCBI Gene 169792] {aka NDH, ZNF515}, NTN1 (netrin 1) [NCBI Gene 9423] {aka MRMV4, NET1, NTN1L}, NKX2-5 (NK2 homeobox 5) [NCBI Gene 1482] {aka CHNG5, CSX, CSX1, HLHS2, NKX2.5, NKX2E}, NKX2-1 (NK2 homeobox 1) [NCBI Gene 7080] {aka BCH, BHC, NK-2, NKX2.1, NKX2A, NMTC1}, PAX8 (paired box 8) [NCBI Gene 7849] {aka PAX-8}
- **Diseases:** endocrine disorders (MESH:D004700), Thyroid Dysgenesis (MESH:D050033), congenital malformations (OMIM:163000), CH (MESH:D003409), agenesis, hypoplasia, or ectopy (MESH:C536482)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## References

140 references — full list in the complete paper: https://tomesphere.com/paper/PMC12652594/full.md

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Source: https://tomesphere.com/paper/PMC12652594