# A Nationwide Analysis of the Phenotype/Genotype Landscape of Hemophagocytic Lymphohistiocytosis: UNC13D Associates with Poor Prognosis

**Authors:** Dafna Brik Simon, Yarden Greental Ness, Orly Dgany, Sharon Noy-Lotan, Tanya Krasnov, Galit Berger, Tamar Feuerstein, Jerry Stein, Aviva Kraus, Asaf Yanir, Assaf Barg, Elad Jacoby, Noa Mandel-Shorer, Dan Harlev, Ehud Even-Or, Hannah Tamary, Oded Gilad, Orna Steinberg-Shemer, Joanne Yacobovich

PMC · DOI: 10.3390/genes16111315 · Genes · 2025-11-02

## TL;DR

This study analyzed the genetic and clinical features of hemophagocytic lymphohistiocytosis in a diverse patient group, finding that UNC13D gene variations are linked to poor survival.

## Contribution

The study reports a high rate of genetic testing in HLH patients and identifies UNC13D as a strong predictor of poor prognosis.

## Key findings

- UNC13D variants were associated with a 41.6% mortality rate compared to 6.7% for STXBP2 variants.
- Young age at diagnosis and lack of bone marrow transplant were significant predictors of poor outcomes.
- Genetic testing detected FHL-related variants in 72% of patients, highlighting its clinical importance.

## Abstract

Background/objectives: Geographic and ethnic differences influence the genetic landscape of hemophagocytic lymphohistiocytosis (HLH) and the frequency of familial HLH (FHL); this in turn can affect outcomes. Methods: We collected data on 98 patients treated for HLH between 1 January 2001 and 31 July 2024 at four tertiary centers, characterizing the genotype/phenotype correlations. Results: Half of the patients, 51 (52%), were symptomatic by age 1 year and 43 (44%) were diagnosed by that age. Our varied population included 43% Sephardic/Ashkenazi/Ethiopian Jews, 50% Muslim Arabs, and 7% Druze. Molecular analysis was performed on 90.5% of patients and revealed an FHL-related variant in 72%. The genetic variation included biallelic variants in PRF1 (21), UNC13D (12), STXBP2 (15), and STX (1). Eight hemizygous variants were found in X-linked lymphoproliferative disorder-related genes. A RAB27A monoallelic variant in an infant with a severe phenotype was considered pathogenic. The recently described HLH-related gene, ZNFX1, was mutated with varying penetrance in three symptomatic siblings. Overall, of the 94/98 with follow-up, 77% are alive. Strikingly, 5/12 (41.6%) patients with UNC13D variants died while 14/15 (93.3%) patients with STXBP2 variants survived. Logistic regression found poor prognosis associated with young age at diagnosis (p < 0.001), any variant (p = 0.016), UNC13D variant (p < 0.001), poor initial treatment response (p = 0.009), and no BMT (p = 0.005). Conclusions: Our cohort included an extremely high rate of genetic testing and detection of FHL-related variants. UNC13D variations are associated with exceedingly poor outcomes. Response to initial treatment seems crucial for positive outcomes, as does access to hematopoietic stem cell transplantation. Overall, we report a high survival rate, possibly due to a high index of suspicion and prompt diagnosis.

## Linked entities

- **Genes:** UNC13D (unc-13 homolog D) [NCBI Gene 201294], PRF1 (perforin 1) [NCBI Gene 5551], STXBP2 (syntaxin binding protein 2) [NCBI Gene 6813], ST8SIA2 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2) [NCBI Gene 8128], RAB27A (RAB27A, member RAS oncogene family) [NCBI Gene 5873], ZNFX1 (zinc finger NFX1-type containing 1) [NCBI Gene 57169]
- **Diseases:** hemophagocytic lymphohistiocytosis (MONDO:0015540), familial hemophagocytic lymphohistiocytosis (MONDO:0009974)

## Full-text entities

- **Genes:** UNC13D (unc-13 homolog D) [NCBI Gene 201294] {aka HLH3, HPLH3, Munc13-4}, PRF1 (perforin 1) [NCBI Gene 5551] {aka HPLH2, P1, PFP}, RAB27A (RAB27A, member RAS oncogene family) [NCBI Gene 5873] {aka GS2, HsT18676, RAB27, RAM}, STXBP2 (syntaxin binding protein 2) [NCBI Gene 6813] {aka Hunc18b, MUNC18-2, UNC18-2, UNC18B, pp10122, unc-18B}, ST8SIA2 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2) [NCBI Gene 8128] {aka HsT19690, SIAT8-B, SIAT8B, ST8SIA-II, ST8SiaII, STX}, ZNFX1 (zinc finger NFX1-type containing 1) [NCBI Gene 57169] {aka IMD91}
- **Diseases:** X-linked lymphoproliferative disorder (MESH:D008232), FHL (MESH:D051359)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12652584/full.md

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Source: https://tomesphere.com/paper/PMC12652584