# From Model to Crop: Roles of Macroautophagy in Arabidopsis and Legumes

**Authors:** Lanlan Feng, Xiaowei Cui, Meng Gao, Zhenyu Wang

PMC · DOI: 10.3390/genes16111343 · Genes · 2025-11-07

## TL;DR

This review explores how autophagy, a cellular recycling process, functions in Arabidopsis and legumes, focusing on its role in growth, stress adaptation, and nitrogen fixation.

## Contribution

The paper provides a comprehensive review of autophagy mechanisms and functions in legumes, highlighting novel insights into ATG gene roles and regulatory networks.

## Key findings

- Autophagy-related (ATG) genes are conserved in Arabidopsis and key legume species like Glycine max and Medicago truncatula.
- ATG8 gene family members in peanut may be involved in seed development, nitrogen fixation, and drought resistance.
- Phytohormones, transcription factors, and epigenetic modifications regulate autophagy in these plants.

## Abstract

Leguminous plants are critical global crops for food security, animal feed, and ecological sustainability due to their ability to establish nitrogen-fixing symbioses with rhizobia and their high nutritional value. Autophagy, a highly conserved eukaryotic catabolic process, mediates the degradation and recycling of cytoplasmic components through the fusion of autophagosome with vacuole/lysosome and plays essential roles in plant growth, stress adaptation, and cellular homeostasis. This review systematically summarizes current knowledge of autophagy in both Arabidopsis and leguminous plants. We first outline the conserved molecular machinery of autophagy, focusing on core autophagy-related (ATG) genes in Arabidopsis and key legume species such as Glycine max, Arachis hypogaea, Pisum sativum, Cicer arietinum, and Medicago truncatula. Furthermore, the review dissects the intricate molecular regulatory networks controlling autophagy, with an emphasis on the roles of phytohormones, transcription factors, and epigenetic modifications. We then highlight the multifaceted physiological functions of autophagy in these plants. Additionally, a preliminary analysis of the ATG8 gene family in peanut indicates that its members may be involved in seed development, biological nitrogen fixation, and drought resistance. Finally, it highlights key unresolved challenges in legume autophagy research and proposes future research directions. This review aims to provide a comprehensive theoretical framework for understanding the unique regulatory mechanisms of autophagy in legumes and to provide insights for molecular breeding aimed at developing stress-resilient, high-yielding, and high-quality legume cultivars.

## Linked entities

- **Genes:** Atg1 (Autophagy-related 1) [NCBI Gene 39454]
- **Species:** Arabidopsis (taxon 3701), Glycine max (taxon 3847), Arachis hypogaea (taxon 3818), Cicer arietinum (taxon 3827), Medicago truncatula (taxon 3880)

## Full-text entities

- **Chemicals:** nitrogen (MESH:D009584)
- **Species:** Arachis hypogaea (goober, species) [taxon 3818], Glycine max (soybean, species) [taxon 3847], Lathyrus oleraceus (garden pea, species) [taxon 3888], Cicer arietinum (chickpea, species) [taxon 3827], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Medicago truncatula (barrel medic, species) [taxon 3880]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12652088/full.md

## References

124 references — full list in the complete paper: https://tomesphere.com/paper/PMC12652088/full.md

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Source: https://tomesphere.com/paper/PMC12652088