# Identification of Bacterial Networks and Relationship to Host Responses in Early Periodontitis Population over 24 Months

**Authors:** Aaron R. Biesbrock, Sancai Xie, Ping Hu, Cheryl S. Tansky, Xingtao Wei, Hao Ye, Benjamin Circello, Avi Zini, Guy Tobias, Makio Tamura, Mirjana Parlov

PMC · DOI: 10.3390/ijms262210823 · International Journal of Molecular Sciences · 2025-11-07

## TL;DR

This study shows that a specific oral hygiene regimen can reduce harmful bacteria and inflammation in early periodontitis over two years.

## Contribution

The study identifies distinct bacterial networks and their relationship to host inflammatory responses in periodontitis over time.

## Key findings

- The regimen significantly reduced IL-1β, MMP-1, and MMP-9 levels compared to control.
- Two distinct constellations of pathogenic bacteria were identified based on their correlations with disease severity.
- The regimen increased responder sites from 47% to 70% compared to usual care.

## Abstract

This research examined the effects of daily application of an oral hygiene regimen on the subgingival microbiome over 24 months. Generally healthy adults (107 enrolled, 87 completed) with early periodontitis used a home-care regimen (stannous fluoride paste, cetylpyridinium chloride rinse, power toothbrush, and floss) or usual care (control). Subgingival plaque samples were analyzed enzymatically for bacterial toxins. TLR ligands were measured using TLR-SEAP and TLR-ATP assays. Proinflammatory cytokines and metalloproteinases were quantified via immunoassays. Subgingival DNA was sequenced using a shotgun approach to assess microbial diversity. Increasing levels of bacteria, toxins, TLR activation, inflammatory cytokines, and MMPs were observed for periodontitis versus gingivitis and gingivitis versus healthy sites. The regimen significantly reduced levels of the critical proinflammatory cytokine IL-1β, as well as MMP-1 and MMP-9, at 24 months. By month 6, TLR ligands within subgingival plaques decreased. The abundance of pathogenic bacteria correlated with levels of virulence factors, proinflammatory cytokines, MMPs, and severity of clinical measures. Two distinct constellations of pathogenic bacteria were identified. Gingival sites were categorized into responders and non-responders per clinical symptoms and biomarkers. The regimen yielded more responder sites (70%) versus the control (47%), p = 0.0002914. The regimen reduced pathogenic bacteria, IL-1β, MMP1, and MMP-9, paralleling clinical reductions in periodontal disease.

## Linked entities

- **Proteins:** IL1B (interleukin 1 beta), MMP1 (matrix metallopeptidase 1), MMP9 (matrix metallopeptidase 9)
- **Chemicals:** stannous fluoride (PubChem CID 24550), cetylpyridinium chloride (PubChem CID 31239)
- **Diseases:** periodontitis (MONDO:0005076), gingivitis (MONDO:0002508)

## Full-text entities

- **Genes:** IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}
- **Diseases:** periodontal disease (MESH:D010510), inflammatory (MESH:D007249), gingivitis (MESH:D005891), Periodontitis (MESH:D010518)
- **Chemicals:** ATP (MESH:D000255), cetylpyridinium chloride (MESH:D002594), fluoride (MESH:D005459)
- **Species:** Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12652036/full.md

## References

27 references — full list in the complete paper: https://tomesphere.com/paper/PMC12652036/full.md

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Source: https://tomesphere.com/paper/PMC12652036