# A Boy with a Novel Variant in TCF20: An Expanded Phenotype and a Brief Review of the Literature

**Authors:** Diletta Ziveri, Carlo Alberto Cesaroni, Gianluca Contrò, Stefano Giuseppe Caraffi, Francesca Ormitti, Lucrezia Giannini, Agnese Pantani, Anna Cavalli, Susanna Rizzi, Marzia Pollazzon, Daniele Frattini, Carlo Fusco

PMC · DOI: 10.3390/children12111543 · Children · 2025-11-14

## TL;DR

A boy with a new TCF20 gene variant shows ADHD, motor issues, and brain malformation, highlighting the importance of genetic testing and MRI in diagnosing complex neurodevelopmental disorders.

## Contribution

Reports a novel TCF20 variant and expands the known phenotype of TCF20-NDD with Chiari I malformation and oculomotor dyspraxia.

## Key findings

- A de novo pathogenic frameshift variant in TCF20 was identified in an 11-year-old boy with neurodevelopmental symptoms.
- Chiari I malformation was observed in MRI scans, potentially linked to TCF20's role in cranial development.
- Exome sequencing and MRI are recommended for diagnosing unclear neurodevelopmental cases.

## Abstract

What are the main findings?

Chiari I Malformation.

Oculomotor dyspraxia.

What are the implications of the main findings?

Expanding neuroradiological findings in TCF20-NDD.

Exome sequencing is extremely important when the clinical picture is unclear.

Background: TCF20-associated neurodevelopmental disorder (TCF20-NDD) is a heterogeneous clinical condition resulting from defects in gene-encoding Transcription Factor 20, which plays a key role in neuronal development and synaptic function. Here, we present a novel case involving an 11-year-old boy who was referred to us for a neuro-developmental disorder characterized by attention deficit hyperactivity disorder (ADHD), tremor in the upper limbs, tilted head posture, motor delay, impaired executive functioning, and oculomotor dyspraxia. Methods: Genetic tests were performed, including CGH array, molecular analysis of the FMR1 gene, molecular analysis using a next-generation sequencing gene panel targeted for spinocerebellar diseases, and finally, WES including mitochondrial genome analysis. A neuroimaging study of brain and spine was performed using MRI. Results: Trio Whole Exome Sequencing revealed a de novo pathogenic frameshift variant NM_001378418.1:c.5009dup, p.(Thr1671Aspfs*5) in the TCF20 gene. The MRI scan of the brain, cervical, dorsal, and lumbosacral spine revealed Chiari type I malformation. Regarding the pathogenic mechanism underlying Chiari I malformation, it could be found in the homology between TCF20 and the RAI1 gene, the latter being associated with alterations in the posterior cranial fossa. Conclusions: We emphasize the use of exome sequencing in patients with unclear clinical presentations, with awareness of TCF20-associated neurodevelopmental disorder; paying attention to brain MRI findings would be useful to further expand the phenotype of TCF20-NDD.

## Linked entities

- **Genes:** TCF20 (transcription factor 20) [NCBI Gene 6942], FMR1 (fragile X messenger ribonucleoprotein 1) [NCBI Gene 2332], RAI1 (retinoic acid induced 1) [NCBI Gene 10743]
- **Diseases:** neurodevelopmental disorder (MONDO:0700092)

## Full-text entities

- **Genes:** FMR1 (fragile X messenger ribonucleoprotein 1) [NCBI Gene 2332] {aka FMRP, FRAXA, POF, POF1}, TCF20 (transcription factor 20) [NCBI Gene 6942] {aka AR1, DDVIBA, SPBP, TCF-20}, RAI1 (retinoic acid induced 1) [NCBI Gene 10743] {aka SMCR, SMS}
- **Diseases:** neurodevelopmental disorder (MESH:D002658), tremor (MESH:D014202), oculomotor dyspraxia (MESH:D015840), spinocerebellar diseases (MESH:D013132), neuro-developmental disorder (MESH:C536203), Chiari I malformation (MESH:D001139), motor delay (MESH:D006968), impaired executive functioning (MESH:D003072), ADHD (MESH:D001289)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.5009dup, p.(Thr1671Aspfs*5)

## Full text

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## Figures

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## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12651428/full.md

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Source: https://tomesphere.com/paper/PMC12651428