# Plasma Extracellular Vesicles Contain Protein Biomarkers for Capturing Stages of Metabolic Dysfunction-Associated Steatotic Liver Disease: A Preliminary Exploratory Study

**Authors:** Yakun Li, Koen C. van Son, Sandra Serna-Salas, Justina C. Wolters, Nienke P. M. Wassenaar, Stan Driessen, Anne Linde Mak, Anne-Marieke van Dijk, Veera A. T. Houttu, Julia J. Witjes, Diona Zwirs, Michail Doukas, Joanne Verheij, Robin P. F. Dullaart, Hans Blokzijl, Adriaan G. Holleboom, Han Moshage

PMC · DOI: 10.3390/biom15111596 · 2025-11-14

## TL;DR

This study explores plasma extracellular vesicles as non-invasive biomarkers for tracking stages of liver disease linked to metabolic dysfunction.

## Contribution

The study identifies specific EV protein signatures associated with steatosis, steatohepatitis, and fibrosis in MASLD patients.

## Key findings

- Proteins like H4C1, OIT3, and ANPEP are elevated in advanced steatosis, while CCDC25 and KLHL41 are decreased.
- Complement component 7 (C7) is elevated in advanced fibrosis and correlates with liver stiffness measurements.
- C7 shows moderate diagnostic accuracy for differentiating fibrosis stages.

## Abstract

Metabolic dysfunction-associated steatotic liver disease (MASLD) is increasing in both prevalence and severity, highlighting the need for non-invasive biomarkers to assess disease activity. Extracellular vesicles (EVs), which carry molecular cargo from their cells of origin, hold promise as accessible biomarkers. We performed proteomic profiling of plasma-derived EVs from 70 patients with MASLD to identify protein signatures associated with key histological features (steatosis, metabolic dysfunction-associated steatohepatitis (MASH), and fibrosis). These proteins were subsequently correlated with magnetic resonance (MR)-based liver imaging. Plasma EV protein profile differed between mild (S1) and advanced steatosis (S3). H4C1, OIT3, and ANPEP were elevated in S3, while CCDC25 and KLHL41 were decreased (|log2 fold change| > 1, p < 0.05). KLHL41 had a weak-to-moderate correlation with proton density fat fraction (PDFF) (R = −0.34, p = 0.016). GP1BA was upregulated in MASH (log2 fold change = 1.13, p = 0.03) but showed weak correlation with cT1, an imaging parameter for steatohepatitis (R = 0.22, p = 0.173). In fibrosis, complement component 7 (C7) was elevated in advanced (≥F3) vs. mild fibrosis (<F2) (log2 fold change = 0.95, adjusted p = 0.002) and correlated with MR elastography-derived liver stiffness (R = 0.38, p = 0.004). The AUC of C7 for differentiating <F2 vs. ≥F2 and <F3 vs. ≥F3 was 0.80 (95% CI: 0.69–0.91) and 0.83 (95% CI: 0.72–0.93), respectively. In conclusion, plasma EVs contain distinct protein signatures associated with steatosis, steatohepatitis, and fibrosis in MASLD. These preliminary findings support the potential utility of plasma EVs as non-invasive biomarkers and provide insights into disease pathophysiology. However, further validation in larger, independent cohorts is necessary to confirm these associations and establish their clinical relevance.

## Linked entities

- **Proteins:** H4C1 (H4 clustered histone 1), OIT3 (oncoprotein induced transcript 3), ANPEP (alanyl aminopeptidase, membrane), CCDC25 (coiled-coil domain containing 25), KLHL41 (kelch like family member 41), GP1BA (glycoprotein Ib platelet subunit alpha), C7 (complement C7)
- **Diseases:** metabolic dysfunction-associated steatotic liver disease (MONDO:0013209), metabolic dysfunction-associated steatohepatitis (MONDO:0007027)

## Full-text entities

- **Genes:** OIT3 (oncoprotein induced transcript 3) [NCBI Gene 170392] {aka LZP}, KLHL41 (kelch like family member 41) [NCBI Gene 10324] {aka KBTBD10, Krp1, SARCOSIN}, C7 (complement C7) [NCBI Gene 730], GP1BA (glycoprotein Ib platelet subunit alpha) [NCBI Gene 2811] {aka BDPLT1, BDPLT3, BSS, CD42B, CD42b-alpha, DBPLT3}, ANPEP (alanyl aminopeptidase, membrane) [NCBI Gene 290] {aka AP-M, AP-N, APN, CD13, GP150, LAP1}, CCDC25 (coiled-coil domain containing 25) [NCBI Gene 55246]
- **Diseases:** metabolic dysfunction-associated steatohepatitis (MESH:D005234), fibrosis (MESH:D005355), MASLD (MESH:D008107)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12650337/full.md

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Source: https://tomesphere.com/paper/PMC12650337