# Transcriptomic Analysis of Copper Resistance in Saccharomyces cerevisiae: Insights into Adaptive Evolution and Potential Implications for Wood Preservative Treatments

**Authors:** Kusung Chung, Tae-Jong Kim

PMC · DOI: 10.3390/antibiotics14111152 · 2025-11-14

## TL;DR

This study explores how yeast adapts to copper stress, offering insights into improving wood preservatives by understanding resistance mechanisms.

## Contribution

The study identifies specific genes and pathways in yeast that contribute to copper resistance through transcriptomic analysis.

## Key findings

- Copper resistance in yeast involves upregulated genes for copper transport and oxidative stress response.
- Pathways related to protein folding and mitochondrial function are significantly activated under copper stress.
- The findings suggest potential gene targets for developing more effective copper-based wood preservatives.

## Abstract

Background/Objectives: Copper-based wood preservatives are widely used to protect timber from fungal decay; however, the emergence of copper-tolerant fungi reduces their long-term effectiveness. This study aimed to elucidate the molecular mechanisms underlying copper resistance in Saccharomyces cerevisiae through adaptive evolution and transcriptomic profiling. Methods: A copper-resistant mutant was developed via stepwise exposure to CuSO4·5H2O, and its gene expression profile was compared to the wild-type strain under copper stress and non-stress conditions using Affymetrix GeneChip Yeast Genome 2.0 arrays. Results: Differential expression analysis revealed upregulation of key genes involved in copper transport (ATX1 and CTR1), the oxidative stress response (RCK1 and SOD1), and metal ion detoxification (FRE3 and SLF1). Functional enrichment analysis highlighted the significant activation of pathways related to protein folding, mitochondrial function, and transcriptional regulation. Conclusions: These findings provide insights into the adaptive strategies employed by S. cerevisiae to tolerate copper stress and suggest potential gene targets for the development of more effective wood preservatives capable of mitigating fungal resistance.

## Linked entities

- **Genes:** ATOX1 (antioxidant 1 copper chaperone) [NCBI Gene 475], CALCR (calcitonin receptor) [NCBI Gene 799], RCK1 (putative serine/threonine protein kinase RCK1) [NCBI Gene 852719], SOD1 (superoxide dismutase 1) [NCBI Gene 6647], FRE3 (ferric-chelate reductase) [NCBI Gene 854563], SLF1 (SMC5/6 complex localization factor 1) [NCBI Gene 84250]
- **Chemicals:** CuSO4·5H2O (PubChem CID 24463)
- **Species:** Saccharomyces cerevisiae (taxon 4932)

## Full-text entities

- **Genes:** SOD1 (superoxide dismutase SOD1) [NCBI Gene 853568] {aka CRS4}, ATX1 (copper metallochaperone ATX1) [NCBI Gene 855462], RCK1 (putative serine/threonine protein kinase RCK1) [NCBI Gene 852719], CTR1 (high-affinity Cu transporter CTR1) [NCBI Gene 856241], SLF1 (Slf1p) [NCBI Gene 852127] {aka SRO99}, FRE3 (ferric-chelate reductase) [NCBI Gene 854563]
- **Diseases:** fungal (MESH:D009181)
- **Chemicals:** Copper (MESH:D003300), CuSO4 5H2O (-)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Fungi (kingdom) [taxon 4751]

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12649743/full.md

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Source: https://tomesphere.com/paper/PMC12649743