# Dynamic Characterization of Antioxidant-Related, Non-Volatile, and Volatile Metabolite Profiles of Cherry Tomato During Ripening

**Authors:** Zhimiao Li, Sihui Guan, Rongqing Wang, Meiying Ruan, Qingjing Ye, Zhuping Yao, Chenxu Liu, Hongjian Wan, Guozhi Zhou, Yuan Cheng

PMC · DOI: 10.3390/antiox14111359 · 2025-11-13

## TL;DR

This study tracks changes in cherry tomato metabolites during ripening, revealing how nutritional and sensory qualities develop.

## Contribution

The paper provides a comprehensive, stage-specific metabolite profile linking ripening to antioxidant and sensory traits in cherry tomatoes.

## Key findings

- Ripening increases lycopene, glucose/fructose, and antioxidant vitamins (A, E, C) while decreasing sucrose and bitter steroidal glycoalkaloids.
- Non-volatile metabolites like phenolic acids and flavonoids accumulate at red-ripe stage, enhancing nutritional quality.
- Volatile compounds shift toward fruity-floral odorants during ripening, with esters and terpenoids dominating the volatilome.

## Abstract

Cherry tomato is a notable dietary source of metabolites associated with antioxidant functions. However, how ripening reshapes primary, specialized, and volatile metabolites remains incompletely resolved. Green-ripe and red-ripe fruits were comparatively analyzed using targeted HPLC assays for quality indices and vitamins, UPLC–MS/MS for non-volatile metabolites, and HS-SPME–GC–MS for volatiles. Ripening was accompanied by a pronounced accumulation of lycopene and an increase in soluble solids, reflecting a shift of sugars toward glucose and fructose while sucrose remained low. Organic acids declined overall, with citric acid remaining predominant. The free-amino-acid pool expanded, with redistribution from GABA toward glutamate and aspartate. Vitamins exhibited stage-dependent patterns; antioxidant-related vitamins (A, E, and C) were higher at the red-ripe stage, indicating a compositional enhancement relevant to nutritional quality. Non-volatile metabolomics revealed 618 differentially accumulated metabolites, with phenolic acids, flavonoids, alkaloids, amino acids, and lipids as major classes. Phenolic acids and flavonols, dominated by hydroxycinnamoyl-quinic acids and quercetin/kaempferol glycosides, accumulated at the red-ripe stage, whereas steroidal glycoalkaloids decreased, suggesting conversion away from bitter or anti-nutritional constituents. GC–MS profiling identified 788 volatiles, with esters, terpenoids, and ketones contributing more than half of the volatilome. Ripening favored fruity–floral odorants such as β-ionone and (5Z)-octa-1,5-dien-3-one, while reducing green-leaf aldehydes. These stage-specific shifts in metabolite composition jointly define the sensory and nutritional maturation of cherry tomato. The identified metabolite markers provide a foundation for evaluating fruit maturity and guiding breeding toward improved quality attributes.

## Linked entities

- **Chemicals:** lycopene (PubChem CID 446925), glucose (PubChem CID 5793), fructose (PubChem CID 5984), sucrose (PubChem CID 5988), citric acid (PubChem CID 311), GABA (PubChem CID 119), glutamate (PubChem CID 611), aspartate (PubChem CID 5960), vitamin A (PubChem CID 445354), vitamin E (PubChem CID 14985), vitamin C (PubChem CID 54670067), quercetin (PubChem CID 5280343), β-ionone (PubChem CID 638014), (5Z)-octa-1,5-dien-3-one (PubChem CID 6429343)
- **Species:** Solanum lycopersicum (taxon 4081)

## Full-text entities

- **Chemicals:** beta-ionone (MESH:C008157), alkaloids (MESH:D000470), ketones (MESH:D007659), (5Z)-octa-1,5-dien-3-one (-), Phenolic acids (MESH:C017616), quercetin (MESH:D011794), aspartate (MESH:D001224), citric acid (MESH:D019343), sucrose (MESH:D013395), fructose (MESH:D005632), sugars (MESH:D000073893), lipids (MESH:D008055), flavonoids (MESH:D005419), flavonols (MESH:D044948), glutamate (MESH:D018698), HS (MESH:D006859), amino acids (MESH:D000596), GABA (MESH:D005680), glucose (MESH:D005947), lycopene (MESH:D000077276), aldehydes (MESH:D000447), esters (MESH:D004952), terpenoids (MESH:D013729)
- **Species:** Solanum lycopersicum (tomato, species) [taxon 4081]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12649427/full.md

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Source: https://tomesphere.com/paper/PMC12649427