# A case report: identifying a novel variant in ELOC(TCEB1)-mutant renal cell carcinoma

**Authors:** Hai-Peng Cheng, Na-Mei Li, Ke-Xin Zeng, Peng Zhou, Xiao-Hong Li

PMC · DOI: 10.3389/fonc.2025.1661834 · Frontiers in Oncology · 2025-11-11

## TL;DR

This case report describes a new mutation in the ELOC(TCEB1) gene found in a 48-year-old male with a specific type of kidney cancer, aiding in its diagnosis and understanding.

## Contribution

The study identifies a novel TCEB1 mutation (c.218T>A, p.V73E) in ELOC(TCEB1)-mutant renal cell carcinoma, previously unreported.

## Key findings

- The tumor exhibited clear cell morphology and expressed multiple markers including PAX8, CA9, and ELOC(TCEB1).
- The novel TCEB1 mutation was confirmed using next-generation and Sanger sequencing.
- The case expands the known mutation spectrum of ELOC(TCEB1)-RCC and supports the use of genetic testing for diagnosis.

## Abstract

ELOC(TCEB1)-mutant renal cell carcinoma [ELOC(TCEB1)-RCC] is a newly recognized type of RCC characterized by clear cell morphology and ELOC(TCEB1) gene mutation. We analyzed one case with a point mutation in TCEB1 c.218T>A (p.V73E), which is a novel mutation site and has not been reported in ELOC(TCEB1)-RCC. The case involved a male individual of age 48, whose computed tomography scan of the abdomen indicated the presence of a solid nodule located in the kidney. The tumor cells showed expression of PAX8, CA9, AMACR/P504S, Vimentin, CK7, CD10, FH, INI1(SMARCB1) and ELOC(TCEB1), and ELOC was mainly located in the nucleus. CD117, TFE3, HMB45, and SDHB were not express, and the expression rate of Ki67 was <5%. The novel variant in ELOC(TCEB1) gene was identified by the next-generation sequencing (NGS) test, subsequently also confirmed by Sanger sequencing. The ELOC(TCEB1) gene mutation testing is helpful for the diagnosis of this type of RCC. The case further expands our knowledge of the spectrum of TCEB1 gene mutation in ELOC(TCEB1)-RCC and enhances the optimization of clinical decision-making.

## Linked entities

- **Genes:** ELOC (elongin C) [NCBI Gene 6921], PAX8 (paired box 8) [NCBI Gene 7849], CA9 (carbonic anhydrase 9) [NCBI Gene 768], PRELID1 (PRELI domain containing 1) [NCBI Gene 737446], KRT7 (keratin 7) [NCBI Gene 3855], MME (membrane metalloendopeptidase) [NCBI Gene 4311], FH (fumarate hydratase) [NCBI Gene 2271], ELOC (elongin C) [NCBI Gene 6921], KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815], TFE3 (transcription factor binding to IGHM enhancer 3) [NCBI Gene 7030], PMEL (premelanosome protein) [NCBI Gene 6490], SDHB (succinate dehydrogenase complex iron sulfur subunit B) [NCBI Gene 6390], Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345]
- **Diseases:** renal cell carcinoma (MONDO:0005086)

## Full-text entities

- **Genes:** PAX8 (paired box 8) [NCBI Gene 7849] {aka PAX-8}, ELOC (elongin C) [NCBI Gene 6921] {aka SIII, TCEB1}, SDHB (succinate dehydrogenase complex iron sulfur subunit B) [NCBI Gene 6390] {aka CWS2, IP, MC2DN4, PGL4, PPGL4, SDH}, VIM (vimentin) [NCBI Gene 7431], KRT7 (keratin 7) [NCBI Gene 3855] {aka CK7, K2C7, K7, SCL}, MME (membrane metalloendopeptidase) [NCBI Gene 4311] {aka CALLA, CD10, CMT2T, NEP, SCA43, SFE}, AMACR (alpha-methylacyl-CoA racemase) [NCBI Gene 23600] {aka AMACRD, CBAS4, P504S, RACE, RM}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, TFE3 (transcription factor binding to IGHM enhancer 3) [NCBI Gene 7030] {aka MRXSPF, RCCP2, RCCX1, TFEA, bHLHe33}, CA9 (carbonic anhydrase 9) [NCBI Gene 768] {aka CAIX, MN}, SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598] {aka BAF47, CSS3, INI-1, INI1, MRD15, PPP1R144}
- **Diseases:** RCC (MESH:D002292), tumor (MESH:D009369)
- **Mutations:** p.V73E, P504S, c.218T>A

## Full text

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## Figures

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## References

18 references — full list in the complete paper: https://tomesphere.com/paper/PMC12645057/full.md

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Source: https://tomesphere.com/paper/PMC12645057