# Proteomic discovery of DEK and NUMA1 as new players in UV-induced DNA damage repair mechanisms

**Authors:** Namwoo Kim, Mihyun Kim, Eunwoo Jeong, Jung-Eun Yeo, Byung-gyu Kim, Kyungjae Myung, Orlando D. Schärer, Kyoo-young Lee

PMC · DOI: 10.1038/s41420-025-02823-z · Cell Death Discovery · 2025-11-24

## TL;DR

This study identifies DEK and NUMA1 as new proteins involved in repairing UV-induced DNA damage, showing their role in coordinating repair pathways.

## Contribution

The paper introduces DEK and NUMA1 as novel regulators of UV-induced DNA repair mechanisms.

## Key findings

- DEK and NUMA1 depletion delays UV lesion repair and increases UV sensitivity.
- XPF recruitment to UV-damaged sites is impaired without DEK or NUMA1.
- APE1-mediated BER is affected in DEK- or NUMA1-depleted cells due to PCNA accumulation.

## Abstract

Ultraviolet (UV)-induced DNA lesions threaten genomic stability and are associated with skin carcinogenesis. These lesions are primarily repaired by the nucleotide excision repair (NER) pathway. However, alternative repair mechanisms and regulators are emerging as critical contributors to managing UV lesions. Here, we used a click chemistry-based proteomic approach to identify DEK and NUMA1 as novel regulators of UV-induced DNA lesion repair. Depletion of DEK or NUMA1 resulted in delayed UV lesion repair and increased cellular UV sensitivity. This was accompanied by delayed recruitment of XPF to UV-damaged sites. Notably, abnormal accumulation of proliferating cell nuclear antigen (PCNA) at UV lesions was observed in DEK- or NUMA1-depleted cells. This PCNA accumulation was not entirely dependent on NER, as it also involved contributions from apurinic/apyrimidinic endonuclease 1 (APE1), a key protein in base excision repair (BER). Co-depletion experiments revealed an epistatic relationship between DEK or NUMA1 and APE1, but not with XPA, suggesting an impaired BER in DEK- or NUMA1-depleted cells, possibly due to excessive PCNA accumulation. Our findings suggest that DEK and NUMA1 facilitate efficient UV lesion removal by promoting proper NER activity and regulating APE1-mediated long-patch BER, highlighting the collaborative roles of NER and BER in UV lesion repair.

## Linked entities

- **Genes:** DEK (DEK proto-oncogene) [NCBI Gene 7913], NUMA1 (nuclear mitotic apparatus protein 1) [NCBI Gene 4926], ERCC4 (ERCC excision repair 4, endonuclease catalytic subunit) [NCBI Gene 2072], PCNA (proliferating cell nuclear antigen) [NCBI Gene 5111], APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1) [NCBI Gene 328], XPA (XPA, DNA damage recognition and repair factor) [NCBI Gene 7507]
- **Proteins:** DEK (DEK proto-oncogene), NUMA1 (nuclear mitotic apparatus protein 1), ERCC4 (ERCC excision repair 4, endonuclease catalytic subunit), PCNA (proliferating cell nuclear antigen), APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1), XPA (XPA, DNA damage recognition and repair factor)

## Full-text entities

- **Genes:** PCNA (proliferating cell nuclear antigen) [NCBI Gene 5111] {aka ATLD2}, ERCC4 (ERCC excision repair 4, endonuclease catalytic subunit) [NCBI Gene 2072] {aka ERCC11, FANCQ, RAD1, XFEPS, XPF}, NUMA1 (nuclear mitotic apparatus protein 1) [NCBI Gene 4926] {aka NMP-22, NUMA}, XPA (XPA, DNA damage recognition and repair factor) [NCBI Gene 7507] {aka XP1, XPAC}, APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1) [NCBI Gene 328] {aka APE, APE1, APEN, APEX, APX, HAP1}, DEK (DEK proto-oncogene) [NCBI Gene 7913] {aka D6S231E}
- **Diseases:** skin carcinogenesis (MESH:D063646)
- **Chemicals:** base (-)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12644609/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12644609/full.md

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Source: https://tomesphere.com/paper/PMC12644609