# The implications of alternative splicing regulation for maximum lifespan

**Authors:** Wei Jiang, Sika Zheng, Liang Chen

PMC · DOI: 10.1038/s41467-025-65339-1 · Nature Communications · 2025-11-24

## TL;DR

Alternative splicing in the brain is linked to longer lifespans in mammals, offering new insights into longevity.

## Contribution

Identifies conserved alternative splicing events associated with maximum lifespan, distinct from gene expression patterns.

## Key findings

- Hundreds of AS events in the brain are strongly associated with maximum lifespan across 26 mammalian species.
- MLS-associated AS events are enriched in stress response and epigenetic regulation pathways.
- MLS-AS events show stronger RNA-binding protein motif coordination compared to age-associated splicing.

## Abstract

Mammalian maximum lifespan (MLS) varies over a hundred-fold, yet the molecular mechanisms underlying this diversity remain unclear. We present a cross-species analysis of alternative splicing (AS) across six tissues in 26 mammals, identifying hundreds of conserved AS events significantly associated with MLS, with the brain containing twice as many tissue-specific events as peripheral tissues. MLS-AS events are enriched in pathways related to mRNA processing, stress response, neuronal functions, and epigenetic regulation, and are largely distinct from genes whose expression correlates with MLS, indicating that AS captures unique lifespan-related signals. The brain exhibits certain associations divergent from peripheral tissues and reduced overlap with body mass (BM)-associated splicing; neither is observed at the gene expression level. While MLS- and age-associated AS events show limited overlap, the shared events are enriched in intrinsically disordered protein regions, suggesting a role in protein flexibility and stress adaptability. Furthermore, MLS-associated AS events display stronger RNA-binding protein (RBP) motif coordination than age-associated ones, highlighting a more genetically programmed adaptation for lifespan determination, in contrast to the more variable splicing changes seen with chronological aging. These findings suggest alternative splicing as a distinct, transcription-independent axis of lifespan regulation, offering insights into the molecular basis of longevity.

The molecular basis for differing life spans in mammals is unclear. Here, the authors show that alternative splicing, a form of gene regulation, is strongly linked to longevity across 26 species, with the brain exhibiting unique patterns.

## Full-text entities

- **Genes:** PCBP2 (poly(rC) binding protein 2) [NCBI Gene 5094] {aka HNRNPE2, HNRPE2, hnRNP-E2}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}, ESRP1 (epithelial splicing regulatory protein 1) [NCBI Gene 54845] {aka DFNB109, RBM35A, RMB35A}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2) [NCBI Gene 10644] {aka IMP-2, IMP2, VICKZ2}, MBNL1 (muscleblind like splicing regulator 1) [NCBI Gene 4154] {aka EXP, MBNL}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, PPRC1 (PPARG related coactivator 1) [NCBI Gene 23082] {aka PRC}, TRA2B (transformer 2 beta homolog) [NCBI Gene 6434] {aka Htra2-beta, PPP1R156, RAMELN, SFRS10, SRFS10, TRA2-BETA}, RBMS3 (RNA binding motif single stranded interacting protein 3) [NCBI Gene 27303], ZC3H10 (zinc finger CCCH-type containing 10) [NCBI Gene 84872] {aka ZC3HDC10}, ELAVL4 (ELAV like RNA binding protein 4) [NCBI Gene 1996] {aka HUD, PNEM}, YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, LINC02605 (long intergenic non-protein coding RNA 2605) [NCBI Gene 112935892] {aka AS, IL-7, IL-7-AS}, HNRNPD (heterogeneous nuclear ribonucleoprotein D) [NCBI Gene 3184] {aka AUF1, AUF1A, HNRPD, P37, hnRNPD0}, HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1) [NCBI Gene 3181] {aka HNRNPA2, HNRNPB1, HNRPA2, HNRPA2B1, HNRPB1, IBMPFD2}, IGKV5-2 (immunoglobulin kappa variable 5-2) [NCBI Gene 28907] {aka B2, IGKV52}, TIA1 (TIA1 cytotoxic granule associated RNA binding protein) [NCBI Gene 7072] {aka ALS26, TIA-1, WDM}, ELAVL1 (ELAV like RNA binding protein 1) [NCBI Gene 1994] {aka ELAV1, HUR, Hua, MelG}, BAK1 (BCL2 antagonist/killer 1) [NCBI Gene 578] {aka BAK, BAK-LIKE, BCL2L7, CDN1}, IGKV7-3 (immunoglobulin kappa variable 7-3 (pseudogene)) [NCBI Gene 28905] {aka B1, IGKV73}, Pappa (pregnancy-associated plasma protein A) [NCBI Gene 18491] {aka 8430414N03Rik, IGFBP-4ase, PAG1, PAPP-A}, HCCS (holocytochrome c synthase) [NCBI Gene 3052] {aka CCHL, LSDMCA1, MCOPS7, MLS}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, SAMD4A (sterile alpha motif domain containing 4A) [NCBI Gene 23034] {aka SAMD4, SMAUG, SMAUG1, SMG, SMGA}, CPEB1 (cytoplasmic polyadenylation element binding protein 1) [NCBI Gene 64506] {aka CPE-BP1, CPEB, CPEB-1, h-CPEB, hCPEB-1}, Bmal1 (basic helix-loop-helix ARNT like 1) [NCBI Gene 11865] {aka Arnt3, Arntl, BMAL1b, MOP3, bHLHe5, bmal1b'}, QKI (QKI, KH domain containing RNA binding) [NCBI Gene 9444] {aka Hqk, QK, QK1, QK3, hqkI}, HNRNPK (heterogeneous nuclear ribonucleoprotein K) [NCBI Gene 3190] {aka AUKS, CSBP, HNRPK, TUNP}, RBP4 (retinol binding protein 4) [NCBI Gene 5950] {aka MCOPCB10, RDCCAS}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CPEB4 (cytoplasmic polyadenylation element binding protein 4) [NCBI Gene 80315] {aka CPE-BP4, hCPEB-4}, HNRNPC (heterogeneous nuclear ribonucleoprotein C) [NCBI Gene 3183] {aka HNRNP, HNRPC, MRD74, SNRPC}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, CPEB2 (cytoplasmic polyadenylation element binding protein 2) [NCBI Gene 132864] {aka CPE-BP2, CPEB-2, hCPEB-2}, PTBP2 (polypyrimidine tract binding protein 2) [NCBI Gene 58155] {aka PTBLP, brPTB, nPTB}, RENBP (renin binding protein) [NCBI Gene 5973] {aka RBP, RNBP}, RBM8A (RNA binding motif protein 8A) [NCBI Gene 9939] {aka BOV-1A, BOV-1B, BOV-1C, C1DELq21.1, DEL1q21.1, MDS014}, Bmal2 (basic helix-loop-helix ARNT like 2) [NCBI Gene 272322] {aka 4632430A05Rik, Arntl2, CLIF, MOP9, bHLHe6}, SRSF5 (serine and arginine rich splicing factor 5) [NCBI Gene 6430] {aka HRS, SFRS5, SRP40}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, FXR1 (FMR1 autosomal homolog 1) [NCBI Gene 8087] {aka CMYO9A, CMYO9B, CMYP9A, CMYP9B, FXR1P, MYOPMIL}, HNRNPL (heterogeneous nuclear ribonucleoprotein L) [NCBI Gene 3191] {aka HNRPL, P/OKcl.14, hnRNP-L}, EIF4G2 (eukaryotic translation initiation factor 4 gamma 2) [NCBI Gene 1982] {aka AAG1, DAP5, NAT1, P97}
- **Diseases:** inflammation (MESH:D007249), ALS (MESH:D000690), atherosclerosis (MESH:D050197), Alzheimer's disease (MESH:D000544), death (MESH:D003643), cardiovascular disease (MESH:D002318), cancer (MESH:D009369), FTD (MESH:D057180), neurological diseases (MESH:D020271), AS (MESH:C536589), hereditary diseases (MESH:D030342), IDPs (MESH:D020919), ES (MESH:D012512), infection (MESH:D007239), BM (MESH:C536030), neurodegeneration (MESH:D019636), cataracts (MESH:D002386), sarcopenia (MESH:D055948)
- **Chemicals:** hydrogen peroxide (MESH:D006861), carbohydrate (MESH:D002241), SUPPA (-), Calcium (MESH:D002118), acylglycerol (MESH:D005989), amino acid (MESH:D000596)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]

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## Figures

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## References

8 references — full list in the complete paper: https://tomesphere.com/paper/PMC12644568/full.md

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Source: https://tomesphere.com/paper/PMC12644568